
BIOCONDUCTOR . ORG {
}
Title:
Bioconductor - cypress
Description:
CYPRESS is a cell-type-specific power tool. This package aims to perform power analysis for the cell-type-specific data. It calculates FDR, FDC, and power, under various study design parameters, including but not limited to sample size, and effect size. It takes the input of a SummarizeExperimental(SE) object with observed mixture data (feature by sample matrix), and the cell-type mixture proportions (sample by cell-type matrix). It can solve the cell-type mixture proportions from the reference free panel from TOAST and conduct tests to identify cell-type-specific differential expression (csDE) genes.
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Keywords {π}
package, bioconductor, cypress, version, packages, celltypespecific, power, release, source, sample, mixture, celltype, aut, enter, install, reports, binary, learn, developers, started, software, assessment, data, size, matrix, proportions, reference, toast, conduct, shilin, meng, tang, httpsbioconductororgpackagescypress, installation, start, documentation, system, details, bioc, gpl, stats, url, macos, cypresstgz, repository, git, clone, code, registration, open,
Topics {βοΈ}
org/packages/cypress source repository cell-type-specific power assessment cell-type-specific power tool /renlyly/cypress bug reports cell-type-specific data cell-type mixture proportions joint galaxy/bioconductor conference bioconductor release tgz source repository source package org/packages/cypress conduct tests cell-type matrix cypress package user' release observed mixture data perform power analysis //code bioconductor support site /renlyly/cypress/issues study design parameters reference free panel script reference manual shilin yu [aut gz windows binary guanqun meng [aut] tgz macos binary git clone https details biocviews e1071 system requirements package aims package installed package version 1 started install packages package macos binary software version //bioconductor bioconductor sample matrix registration open calculates fdr power effect size cre] orcid quietly = true older versions pdf news developer access
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