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Title:
Bioconductor - comapr
Description:
comapr detects crossover intervals for single gametes from their haplotype states sequences and stores the crossovers in GRanges object. The genetic distances can then be calculated via the mapping functions using estimated crossover rates for maker intervals. Visualisation functions for plotting interval-based genetic map or cumulative genetic distances are implemented, which help reveal the variation of crossovers landscapes across the genome and across individuals.
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Keywords {🔍}
bioconductor, package, version, packages, comapr, genetic, crossover, release, source, map, lyu, enter, install, license, binary, learn, developers, started, software, analysis, construction, intervals, crossovers, distances, functions, ruqian, httpsbioconductororgpackagescomapr, installation, start, documentation, system, html, script, text, details, bioc, stats, url, macos, comaprtgz, repository, git, clone, reports, code, registration, open, gbcc, joint, galaxybioconductor,
Topics {✒️}
org/packages/comapr source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package org/packages/comapr genetic map construction release //code bioconductor support site haplotype states sequences script reference manual cumulative genetic distances estimated crossover rates gz windows binary script single-sperm package installed ruqian lyu [aut package version 1 git clone https tgz macos binary details biocviews gviz system requirements package packages genetic distances started install macos binary maker intervals //bioconductor bioconductor single gametes crossover analysis registration open granges object mapping functions visualisation functions cre] orcid quietly = true older versions pdf news developer access org released version devel version visualization version text license crossovers landscapes view documentation url
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