BIOCONDUCTOR . ORG {
}
Title:
Bioconductor - cola
Description:
Subgroup classification is a basic task in genomic data analysis, especially for gene expression and DNA methylation data analysis. It can also be used to test the agreement to known clinical annotations, or to test whether there exist significant batch effects. The cola package provides a general framework for subgroup classification by consensus partitioning. It has the following features: 1. It modularizes the consensus partitioning processes that various methods can be easily integrated. 2. It provides rich visualizations for interpreting the results. 3. It allows running multiple methods at the same time and provides functionalities to straightforward compare results. 4. It provides a new method to extract features which are more efficient to separate subgroups. 5. It automatically generates detailed reports for the complete analysis. 6. It allows applying consensus partitioning in a hierarchical manner.
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Keywords {π}
package, bioconductor, cola, packages, version, consensus, partitioning, release, source, framework, classification, analysis, methods, reports, enter, install, license, binary, learn, developers, started, software, subgroup, data, test, general, features, results, hierarchical, zuguang, huebschmann, installation, start, documentation, system, text, details, bioc, stats, url, macos, colatgz, repository, git, clone, code, registration, open, gbcc, joint,
Topics {βοΈ}
org/packages/cola source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package /bioconductor package release //code bioconductor support site genomic data analysis html reference manual gz windows binary zip macos binary tgz macos binary cola package git clone https consensus partitioning processes applying consensus partitioning οΏ½improve consensus partitioning straightforward compare results details biocviews irlba system requirements package installed running multiple methods zuguang gu [aut /jokergoo/cola https packages started install package consensus partitioning complete analysis software version bioconductor //bioconductor org registration open basic task gene expression clinical annotations easily integrated rich visualizations separate subgroups hierarchical manner cre] orcid 1093/nar/gkaa1146 hierarchical procedure 1093/bib/bbac048 quietly = true older versions pdf news
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