BIOCONDUCTOR . ORG {
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Title:
Bioconductor - cellscape
Description:
CellScape facilitates interactive browsing of single cell clonal evolution datasets. The tool requires two main inputs: (i) the genomic content of each single cell in the form of either copy number segments or targeted mutation values, and (ii) a single cell phylogeny. Phylogenetic formats can vary from dendrogram-like phylogenies with leaf nodes to evolutionary model-derived phylogenies with observed or latent internal nodes. The CellScape phylogeny is flexibly input as a table of source-target edges to support arbitrary representations, where each node may or may not have associated genomic data. The output of CellScape is an interactive interface displaying a single cell phylogeny and a cell-by-locus genomic heatmap representing the mutation status in each cell for each locus.
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Keywords {🔍}
bioconductor, package, cellscape, cell, single, version, packages, release, source, copy, number, genomic, phylogeny, wang, enter, install, binary, learn, developers, started, software, explores, profiles, context, tree, interactive, mutation, phylogenies, nodes, support, shixiang, aut, smith, httpsbioconductororgpackagescellscape, installation, start, documentation, system, details, bioc, url, macos, cellscapetgz, repository, git, clone, reports, code, registration, open,
Topics {✒️}
org/packages/cellscape source repository joint galaxy/bioconductor conference bioconductor release evolutionary model-derived phylogenies tgz source repository copy number segments org/packages/cellscape source package source-target edges single cell tree release single cell phylogeny //code bioconductor support site interactive interface displaying script reference manual shixiang wang [aut gz windows binary targeted mutation values latent internal nodes package installed support arbitrary representations package version 1 git clone https tgz macos binary details biocviews single cell package started install packages cellscape phylogeny macos binary cellscape vignette genomic content genomic data //bioconductor bioconductor leaf nodes mutation status registration open tool requires main inputs phylogenetic formats flexibly input cre] orcid quietly = true older versions gpl-3 depends developer access org
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