
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - ccrepe
Description:
The CCREPE (Compositionality Corrected by REnormalizaion and PErmutation) package is designed to assess the significance of general similarity measures in compositional datasets. In microbial abundance data, for example, the total abundances of all microbes sum to one; CCREPE is designed to take this constraint into account when assigning p-values to similarity measures between the microbes. The package has two functions: ccrepe: Calculates similarity measures, p-values and q-values for relative abundances of bugs in one or two body sites using bootstrap and permutation matrices of the data. nc.score: Calculates species-level co-variation and co-exclusion patterns based on an extension of the checkerboard score to ordinal data.
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Keywords {🔍}
package, bioconductor, ccrepe, packages, version, release, gmailcom, source, similarity, measures, data, install, license, binary, learn, developers, started, software, permutation, designed, abundances, microbes, pvalues, calculates, emma, schwager, bielskicraigbielski, george, weingartgeorgeweingart, installation, start, enter, documentation, system, pdf, text, details, bioc, url, macos, ccrepetgz, repository, git, clone, reports, code, registration, open, gbcc, joint,
Topics {✒️}
org/packages/ccrepe source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package release //code bioconductor support site calculates species-level exclusion patterns based script reference manual gz windows binary zip macos binary tgz macos binary git clone https general similarity measures calculates similarity measures microbial abundance data details biocviews package installed assigning p-values packages started install package similarity measures p-values bioconductor //bioconductor q-values org registration open compositionality corrected compositional datasets total abundances relative abundances body sites ordinal data quietly = true older versions developer access download stats text license released version devel version statistics version score doi checkerboard score microbes sum permutation matrices view documentation
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