
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - cageminer
Description:
This package aims to integrate GWAS-derived SNPs and coexpression networks to mine candidate genes associated with a particular phenotype. For that, users must define a set of guide genes, which are known genes involved in the studied phenotype. Additionally, the mined candidates can be given a score that favor candidates that are hubs and/or transcription factors. The scores can then be used to rank and select the top n most promising genes for downstream experiments.
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23 years and 7 months (reg. 2001-11-19).
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Keywords {๐}
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Topics {โ๏ธ}
org/packages/cageminer source repository /almeidasilvaf/cageminer bug reports joint galaxy/bioconductor conference integrate gwas-derived snps bioconductor release fabrรญcio almeida-silva [aut tgz source repository source package /bioconductor package release //code mine candidate genes prioritize candidate genes bioconductor support site script reference manual gz windows binary zip macos binary tgz macos binary gene coexpression networks package aims package installed git clone https details biocviews bionero system requirements almeida-silva packages started install package coexpression networks cre] orcid venancio tm guide genes genes involved promising genes bioconductor //bioconductor registration open mined candidates favor candidates transcription factors downstream experiments silico plants quietly = true older versions pdf news gpl-3 depends developer access download stats released version devel version
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