BIOCONDUCTOR . ORG {
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Title:
Bioconductor - bnem
Description:
bnem combines the use of indirect measurements of Nested Effects Models (package mnem) with the Boolean networks of CellNOptR. Perturbation experiments of signalling nodes in cells are analysed for their effect on the global gene expression profile. Those profiles give evidence for the Boolean regulation of down-stream nodes in the network, e.g., whether two parents activate their child independently (OR-gate) or jointly (AND-gate).
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Keywords {π}
bioconductor, package, packages, version, bnem, release, pirkl, source, models, indirect, boolean, signalling, enter, pathways, install, reports, binary, learn, developers, started, software, training, measurements, perturbation, experiments, nested, mnem, cellnoptr, nodes, effect, network, martin, synergistic, installation, start, documentation, system, details, bioc, stats, url, macos, bnemtgz, repository, git, clone, code, registration, open, gbcc,
Topics {βοΈ}
org/packages/bnem source repository /martinfxp/bnem/ bug reports joint galaxy/bioconductor conference bioconductor release tgz source repository source package release //code bioconductor support site nested effects models /martinfxp/bnem/issues profiles give evidence script reference manual gz windows binary package installed tgz macos binary git clone https martin pirkl [aut details biocviews rmarkdown system requirements package mnem packages package started install org/content/32/6/893 macos binary training logical models bnem combines perturbation experiments bioconductor //bioconductor boolean networks boolean regulation registration open indirect measurements signalling nodes stream nodes parents activate child independently cre] maintainer οΏ½indirect inference alternative signalling quietly = true older versions pdf news gpl-3 depends developer access org released version
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