BIOCONDUCTOR . ORG {
}
Title:
Bioconductor - batchelor
Description:
Implements a variety of methods for batch correction of single-cell (RNA sequencing) data. This includes methods based on detecting mutually nearest neighbors, as well as several efficient variants of linear regression of the log-expression values. Functions are also provided to perform global rescaling to remove differences in depth between batches, and to perform a principal components analysis that is robust to differences in the numbers of cells across batches.
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23 years and 7 months (reg. 2001-11-19).
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Keywords {π}
bioconductor, package, packages, version, methods, batchelor, singlecell, batch, release, source, lun, enter, install, binary, learn, developers, started, software, correction, sequencing, data, nearest, neighbors, perform, differences, batches, aaron, haghverdi, effects, installation, start, documentation, system, html, script, details, bioc, stats, url, macos, batchelortgz, repository, git, clone, reports, code, registration, open, gbcc, joint,
Topics {βοΈ}
org/packages/batchelor source repository single-cell rna-sequencing data joint galaxy/bioconductor conference bioconductor release tgz source repository source package release //code bioconductor support site log-expression values principal components analysis package installed correcting batch effects single-cell aaron lun [aut gz windows binary includes methods based git clone https tgz macos binary perform global rescaling script reference manual details biocviews beachmat system requirements batch correction package packages started install rna sequencing οΏ½batch effects macos binary bioconductor //bioconductor lun atl extending methods org registration open efficient variants linear regression morgan md marioni jc quietly = true older versions pdf news gpl-3 depends singlecellexperiment imports developer access released version devel version transcriptomics version remove differences
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