BIOCONDUCTOR . ORG {
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Title:
Bioconductor - atena
Description:
Quantify expression of transposable elements (TEs) from RNA-seq data through different methods, including ERVmap, TEtranscripts and Telescope. A common interface is provided to use each of these methods, which consists of building a parameter object, calling the quantification function with this object and getting a SummarizedExperiment object as output container of the quantified expression profiles. The implementation allows one to quantify TEs and gene transcripts in an integrated manner.
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Keywords {🔍}
package, bioconductor, packages, version, atena, source, release, transposable, elements, methods, object, castelo, enter, install, bioc, reports, binary, learn, developers, started, software, analysis, quantify, expression, tes, rnaseq, summarizedexperiment, calvoserra, aut, robert, httpsbioconductororgpackagesatena, installation, start, documentation, system, details, stats, url, macos, atenatgz, repository, git, clone, code, registration, open, gbcc, joint, galaxybioconductor, conference,
Topics {✒️}
org/packages/atena source repository /rcastelo/atena bug reports joint galaxy/bioconductor conference bioconductor release beatriz calvo-serra [aut] org/packages/atena tgz source repository source package source packages release //code bioconductor support site /rcastelo/atena/issues rna-seq data script reference manual gz windows binary zip macos binary tgz macos binary atena package quantified expression profiles robert castelo [aut package installed git clone https details biocviews cli system requirements package version 1 source archive started install package calvo-serra packages transposable elements //bioconductor bioconductor quantify expression registration open including ervmap common interface quantification function output container gene transcripts integrated manner cre] maintainer quietly = true older versions pdf news summarizedexperiment imports developer access org released version
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