RDRR . IO {
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Title:
plot_ordering_genes: Plots genes by mean vs. dispersion, highlighting those... in monocle: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Description:
Each gray point in the plot is a gene. The black dots are those that were included in the last call to setOrderingFilter. The red curve shows the mean-variance model learning by estimateDispersions().
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Keywords {🔍}
monocle, celldataset, expression, cells, genes, tree, plots, package, differential, cell, minimum, function, packages, analysis, return, spanning, trajectory, rnaseq, class, matrix, object, single, singlecell, test, branchdependent, build, curves, calculate, clusters, model, helper, gene, plot, plotorderinggenes, documentation, rdrrio, find, language, run, clustering, index, readmemd, counting, experiments, code, beam, branches, calibratepercelltotalproposal, distances, celltype,
Topics {✒️}
single-cell rna-seq experiments branch-dependent expression buildbranchcelldataset pq tree package-deprecated branch-dependent genes detectgenes scatter/scran celldataset object code online browse cell type beam monocle index readme single-cell individual packages celldataset class celldataset-methods minimum spanning tree pq tree fitmodel hsmmsinglecell package load_hsmm_markers classic muscle genes celltypehierarchy class clustercells language docs run instantaneous log ratio estimate dispersions estimatesizefactorsformatrix red curve shows language documentation run provide technical support differential expression diff_test_helper celldataset class cellpairwisedistances package documentation rdrr monocle documentation built celltype class celltypehierarchy residuals matrix gensmoothcurves response matrix get_classic_muscle_markers popular single calculate divergence times variance model learning browser monocle clustering monocle celldataset object branch-dependent plots kinetic clusters cell counting arguments cds cells cellpairwisedistances-set differential expression package authors minimum threshold io home celldataset object celldateset object clusters genes usage 1 trajectory analysis detects genes md monocle
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Article:
context:http://schema.org
mainEntityOfPage:
type:WebPage
id:https://rdrr.io/bioc/monocle/man/plot_ordering_genes.html
headline:Plots genes by mean vs. dispersion, highlighting those...
datePublished:2020-10-27T00:00:00
dateModified:2020-11-08T17:06:31.231523+00:00
author:
type:Person
name:Cole Trapnell
description:Each gray point in the plot is a gene. The black dots are those that were included in the last call to setOrderingFilter. The red curve shows the mean-variance model learning by estimateDispersions().
WebPage:
id:https://rdrr.io/bioc/monocle/man/plot_ordering_genes.html
Person:
name:Cole Trapnell
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