RDRR . IO {
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Title:
plot_genes_in_pseudotime: Plots expression for one or more genes as a function of... in monocle: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Description:
Plots expression for one or more genes as a function of pseudotime. Plotting allows you determine if the ordering produced by orderCells() is correct and it does not need to be flipped using the "reverse" flag in orderCells
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Keywords {🔍}
expression, genes, monocle, celldataset, cells, cell, function, plots, minimum, tree, package, differential, packages, run, analysis, object, return, spanning, null, trajectory, rnaseq, class, matrix, pseudotime, single, singlecell, test, branchdependent, build, curves, calculate, number, clusters, model, helper, ordering, data, ordercells, plot, plotgenesinpseudotime, true, points, panels, ggplot, documentation, rdrrio, find, language, clustering, index,
Topics {✒️}
single-cell rna-seq experiments pq tree package-deprecated branch-dependent expression buildbranchcelldataset scatter/scran celldataset object branch-dependent genes detectgenes code online browse monocle index readme individual packages celldataset class celldataset-methods cell type beam pq tree fitmodel single-cell minimum spanning tree celltypehierarchy class clustercells instantaneous log ratio estimate dispersions estimatesizefactorsformatrix provide technical support classic muscle genes package documentation rdrr differential expression diff_test_helper celldataset class cellpairwisedistances hsmmsinglecell package load_hsmm_markers celltype class celltypehierarchy language documentation run residuals matrix gensmoothcurves response matrix get_classic_muscle_markers language docs run calculate divergence times popular single label figure panels monocle celldataset object browser monocle clustering plots kinetic clusters branch-dependent cells cellpairwisedistances-set arguments cds_subset cell counting cell attribute differential expression package authors data stored celldataset object celldateset object io home minimum threshold plots expression expression level expression trend transform expression vertical_jitter = null
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Article:
context:http://schema.org
mainEntityOfPage:
type:WebPage
id:https://rdrr.io/bioc/monocle/man/plot_genes_in_pseudotime.html
headline:Plots expression for one or more genes as a function of...
datePublished:2020-10-27T00:00:00
dateModified:2020-11-08T17:06:31.231523+00:00
author:
type:Person
name:Cole Trapnell
description:Plots expression for one or more genes as a function of pseudotime. Plotting allows you determine if the ordering produced by orderCells() is correct and it does not need to be flipped using the "reverse" flag in orderCells
WebPage:
id:https://rdrr.io/bioc/monocle/man/plot_genes_in_pseudotime.html
Person:
name:Cole Trapnell
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