RDRR . IO {
}
Title:
plot_clusters: Plots kinetic clusters of genes. in monocle: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Description:
returns a ggplot2 object showing the shapes of the expression patterns followed by a set of pre-selected genes. The topographic lines highlight the distributions of the kinetic patterns relative to overall trend lines.
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Keywords {🔍}
monocle, celldataset, genes, expression, cells, clusters, function, object, tree, plots, package, differential, cell, minimum, packages, run, clustering, analysis, cluster, return, spanning, trajectory, rnaseq, class, matrix, gene, plotclusters, kinetic, null, single, singlecell, test, branchdependent, build, curves, calculate, number, helper, set, plot, documentation, rdrrio, find, language, index, readmemd, counting, experiments, code, beam,
Topics {✒️}
single-cell rna-seq experiments pq tree package-deprecated branch-dependent expression buildbranchcelldataset branch-dependent genes detectgenes scatter/scran celldataset object code online browse monocle index readme cell type beam individual packages single-cell celldataset class celldataset-methods minimum spanning tree ggplot2 object showing pq tree fitmodel hsmmsinglecell package load_hsmm_markers classic muscle genes instantaneous log ratio estimate dispersions estimatesizefactorsformatrix kinetic patterns relative provide technical support differential expression diff_test_helper package documentation rdrr celltypehierarchy class clustercells topographic lines highlight celldataset class cellpairwisedistances celltype class celltypehierarchy pre-selected genes language documentation run residuals matrix gensmoothcurves response matrix get_classic_muscle_markers clustering object produced language docs run calculate divergence times popular single monocle celldataset object browser monocle clustering plots kinetic clusters branch-dependent cell counting cells cellpairwisedistances-set arguments cds differential expression expression patterns package authors celldataset object minimum threshold celldateset object row_samples = null io home trend lines
Schema {🗺️}
Article:
context:http://schema.org
mainEntityOfPage:
type:WebPage
id:https://rdrr.io/bioc/monocle/man/plot_clusters.html
headline:Plots kinetic clusters of genes.
datePublished:2020-10-27T00:00:00
dateModified:2020-11-08T17:06:31.231523+00:00
author:
type:Person
name:Cole Trapnell
description:returns a ggplot2 object showing the shapes of the expression patterns followed by a set of pre-selected genes. The topographic lines highlight the distributions of the kinetic patterns relative to overall trend lines.
WebPage:
id:https://rdrr.io/bioc/monocle/man/plot_clusters.html
Person:
name:Cole Trapnell
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