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adar, expression, glioma, editing, patients, pubmed, article, analysis, google, scholar, grade, rna, cgga, cas, gliomas, lgg, fig, level, survival, rnaseq, cell, zhang, central, gbm, prognostic, samples, idh, glioblastoma, additional, file, tcga, subtype, data, griaqr, study, dataset, based, group, figure, idhmut, wang, atoi, results, datasets, tumor, gria, independent, malignant, mrna, table,

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including α-amino-3-hydroxy-5-methyl-4-isoxazole-propionic acid fan zeng & huimin hu cdc14b/skp2/p21/p27 axis article download pdf prognosis-related genomic alteration cancer genome atlas γ-aminobutyric acid type microrna-376a promotes invasiveness glua1/2r heteromeric channels voltage-gated ion channels mrna expression profile amino acid sequence central nervous system called lower-grade gliomas rna-editing enzyme adar2 kaplan–meier survival analysis national key research rna-editing enzyme adar1 full access kaplan–meier survival analyses high-expression group compared lower-grade diffuse gliomas diffuse lower-grade gliomas factors including age receiver operating characteristic privacy choices/manage cookies normal biological process cox regression analysis alters gene expression di rocco cm 1p/19q status based gene ontology analysis small sample size terms including “transmission 1p/19q codeleted patients multivariate cox analysis integrative genomic analysis adenosine deaminase domain adenosine deaminase domain regulates gene expression creative commons license generates protein diversity promote cell migration gbm idh-wt patients published article ampa receptor channels potassium channel kv1 human reference genome extracellular matrix organization annu rev biochem

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WebPage:
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         headline:ADAR3 expression is an independent prognostic factor in lower-grade diffuse gliomas and positively correlated with the editing level of GRIA2Q607R
         description:RNA editing by adenosine deaminases acting on RNA (ADARs) converts adenosines to inosines (A-to-I) in RNA, that alters gene expression and generates protein diversity. Dysregulation of A-to-I editing has been found associated with a number of nervous system diseases. However, the role of ADAR3, a brain specific high expression adenosine deaminase, in gliomas has rarely been investigated. In this study we illuminated the clinical significance and molecular features of ADAR3 in patients with glioma. 309 glioma samples from Chinese Glioma Genome Atlas were enrolled into this study. In validation sets, 601 glioma samples in TCGA, 410 glioma samples in REMBRANDT and 258 glioma samples in GSE16011 were obtained. Relationships between ADAR3 expression and prognosis-related genomic alteration, outcome and gene ontology analysis were investigated. Moreover, the characteristic of GRIA2Q607R editing in gliomas has been investigated. Graphpad Prism 5.0, SPSS 16.0 and R language were used to perform statistical analysis and graphical work. ADAR3 expression was down regulated along with glioma grade progression in CGGA dataset. ADAR3 was characteristically highly expressed in neural subtype and IDH1/2 mutant preference. Moreover, high expression of ADAR3 predicted a better prognosis in lower-grade glioma (LGG) patients and multivariate analysis suggested ADAR3 expression was an independent prognostic indicator. The results of the three other validation datasets showed similar findings. Bioinformatics analyses suggested that ADAR3 may play a role in the malignant transformation of glioma cells by affecting cell proliferation, angiogenesis or cell adhesion. Furthermore, the editing level of GRIA2Q607R was significantly correlated with ADAR3 expression. Our study demonstrated the clinical and molecular characterization of ADAR3 in glioma development and progression. ADAR3 expression was negatively associated with tumor malignant in the overall glioma patients. And it was a favorable independent prognostic indicator of LGG patients. ADAR3 appeared to act as a tumor suppressor in glioma cells. Therefore, ADAR3 represented a potential therapeutic target and useful prognostic factor for glioma patients.
         datePublished:2018-12-03T00:00:00Z
         dateModified:2018-12-03T00:00:00Z
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            ADAR3
            A-to-I editing
            Prognosis
            GRIA2Q607R
            Lower-grade glioma
            Cancer Research
            Cell Biology
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      headline:ADAR3 expression is an independent prognostic factor in lower-grade diffuse gliomas and positively correlated with the editing level of GRIA2Q607R
      description:RNA editing by adenosine deaminases acting on RNA (ADARs) converts adenosines to inosines (A-to-I) in RNA, that alters gene expression and generates protein diversity. Dysregulation of A-to-I editing has been found associated with a number of nervous system diseases. However, the role of ADAR3, a brain specific high expression adenosine deaminase, in gliomas has rarely been investigated. In this study we illuminated the clinical significance and molecular features of ADAR3 in patients with glioma. 309 glioma samples from Chinese Glioma Genome Atlas were enrolled into this study. In validation sets, 601 glioma samples in TCGA, 410 glioma samples in REMBRANDT and 258 glioma samples in GSE16011 were obtained. Relationships between ADAR3 expression and prognosis-related genomic alteration, outcome and gene ontology analysis were investigated. Moreover, the characteristic of GRIA2Q607R editing in gliomas has been investigated. Graphpad Prism 5.0, SPSS 16.0 and R language were used to perform statistical analysis and graphical work. ADAR3 expression was down regulated along with glioma grade progression in CGGA dataset. ADAR3 was characteristically highly expressed in neural subtype and IDH1/2 mutant preference. Moreover, high expression of ADAR3 predicted a better prognosis in lower-grade glioma (LGG) patients and multivariate analysis suggested ADAR3 expression was an independent prognostic indicator. The results of the three other validation datasets showed similar findings. Bioinformatics analyses suggested that ADAR3 may play a role in the malignant transformation of glioma cells by affecting cell proliferation, angiogenesis or cell adhesion. Furthermore, the editing level of GRIA2Q607R was significantly correlated with ADAR3 expression. Our study demonstrated the clinical and molecular characterization of ADAR3 in glioma development and progression. ADAR3 expression was negatively associated with tumor malignant in the overall glioma patients. And it was a favorable independent prognostic indicator of LGG patients. ADAR3 appeared to act as a tumor suppressor in glioma cells. Therefore, ADAR3 represented a potential therapeutic target and useful prognostic factor for glioma patients.
      datePublished:2018-12-03T00:00:00Z
      dateModified:2018-12-03T00:00:00Z
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      pageEnd:12
      license:http://creativecommons.org/publicdomain/zero/1.0/
      sameAs:https://doi.org/10.1186/s12935-018-0695-8
      keywords:
         ADAR3
         A-to-I editing
         Prognosis
         GRIA2Q607R
         Lower-grade glioma
         Cancer Research
         Cell Biology
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            name:Ying Zhang
            url:http://orcid.org/0000-0002-7613-6188
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                  address:
                     name:Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China
                     type:PostalAddress
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                  name:Chinese Glioma Cooperative Group (CGCG)
                  address:
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                  address:
                     name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
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            address:
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            address:
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      name:Chinese Glioma Cooperative Group (CGCG), Beijing, China
      name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Radiotherapy, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China
      name:Chinese Glioma Cooperative Group (CGCG), Beijing, China
      name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Radiotherapy, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China
      name:Chinese Glioma Cooperative Group (CGCG), Beijing, China
      name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Radiotherapy, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China
      name:Chinese Glioma Cooperative Group (CGCG), Beijing, China
      name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Radiotherapy, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China
      name:Chinese Glioma Cooperative Group (CGCG), Beijing, China
      name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Radiotherapy, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China
      name:Chinese Glioma Cooperative Group (CGCG), Beijing, China
      name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Radiotherapy, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China
      name:Chinese Glioma Cooperative Group (CGCG), Beijing, China
      name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Radiotherapy, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China
      name:Chinese Glioma Cooperative Group (CGCG), Beijing, China
      name:Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
      name:Department of Radiotherapy, Beijing Tiantan Hospital, Capital Medical University, Beijing, China

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