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estrogen receptor alpha-positive cross-species gene-expression analysis heat-mediated epitope retrieval article number r76 article download pdf intrinsic list-based classifications prb-deficient/p53-deficient models genome-wide expression patterns mammary-specific model demonstrates precursor/stem cell population human data/gene lists related subjects terry van dyke & charles er-regulated gene cassette cell-type-specific responses top line-yellow group hierarchical clustering-based results no1-cn-05024/cn/nci gene expression profiling c57bl/6j mice leads high oncogenic h-ras mmtv-wnt-1 transgenic mice estrogen receptor status iruela-arispe ml kras2-linked genes prompted full size image repressing e-cadherin expression sv40 t-antigen mouse-human combined dataset human er-responsive genes intrinsic gene set authors’ original file wild-type mammary samples c-myc-induced tumorigenesis human breast cancers human 'claudin-low' tumors dr cam patterson tumor suppressor genes basal/myoepithelial gene clusters gene sets characteristic natl cancer inst poor clinical outcome van de rijn human her2+/er- tumors her2+/er- human tumors snow gb human her2+/er- subtype privacy choices/manage cookies supervised analysis method tgwap-myc 'spindloid' tumors

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         headline:Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
         description:Although numerous mouse models of breast carcinomas have been developed, we do not know the extent to which any faithfully represent clinically significant human phenotypes. To address this need, we characterized mammary tumor gene expression profiles from 13 different murine models using DNA microarrays and compared the resulting data to those from human breast tumors. Unsupervised hierarchical clustering analysis showed that six models (TgWAP-Myc, TgMMTV-Neu, TgMMTV-PyMT, TgWAP-Int3, TgWAP-Tag, and TgC3(1)-Tag) yielded tumors with distinctive and homogeneous expression patterns within each strain. However, in each of four other models (TgWAP-T 121 , TgMMTV-Wnt1, Brca1 Co/Co ;TgMMTV-Cre;p53 +/- and DMBA-induced), tumors with a variety of histologies and expression profiles developed. In many models, similarities to human breast tumors were recognized, including proliferation and human breast tumor subtype signatures. Significantly, tumors of several models displayed characteristics of human basal-like breast tumors, including two models with induced Brca1 deficiencies. Tumors of other murine models shared features and trended towards significance of gene enrichment with human luminal tumors; however, these murine tumors lacked expression of estrogen receptor (ER) and ER-regulated genes. TgMMTV-Neu tumors did not have a significant gene overlap with the human HER2+/ER- subtype and were more similar to human luminal tumors. Many of the defining characteristics of human subtypes were conserved among the mouse models. Although no single mouse model recapitulated all the expression features of a given human subtype, these shared expression features provide a common framework for an improved integration of murine mammary tumor models with human breast tumors.
         datePublished:2007-05-10T00:00:00Z
         dateModified:2007-05-10T00:00:00Z
         pageStart:1
         pageEnd:17
         license:http://creativecommons.org/licenses/by/2.0/
         sameAs:https://doi.org/10.1186/gb-2007-8-5-r76
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            Estrogen Receptor
            Ionize Radiation
            Additional Data File
            Murine Tumor
            Human Breast Tumor
            Animal Genetics and Genomics
            Human Genetics
            Plant Genetics and Genomics
            Microbial Genetics and Genomics
            Bioinformatics
            Evolutionary Biology
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      headline:Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
      description:Although numerous mouse models of breast carcinomas have been developed, we do not know the extent to which any faithfully represent clinically significant human phenotypes. To address this need, we characterized mammary tumor gene expression profiles from 13 different murine models using DNA microarrays and compared the resulting data to those from human breast tumors. Unsupervised hierarchical clustering analysis showed that six models (TgWAP-Myc, TgMMTV-Neu, TgMMTV-PyMT, TgWAP-Int3, TgWAP-Tag, and TgC3(1)-Tag) yielded tumors with distinctive and homogeneous expression patterns within each strain. However, in each of four other models (TgWAP-T 121 , TgMMTV-Wnt1, Brca1 Co/Co ;TgMMTV-Cre;p53 +/- and DMBA-induced), tumors with a variety of histologies and expression profiles developed. In many models, similarities to human breast tumors were recognized, including proliferation and human breast tumor subtype signatures. Significantly, tumors of several models displayed characteristics of human basal-like breast tumors, including two models with induced Brca1 deficiencies. Tumors of other murine models shared features and trended towards significance of gene enrichment with human luminal tumors; however, these murine tumors lacked expression of estrogen receptor (ER) and ER-regulated genes. TgMMTV-Neu tumors did not have a significant gene overlap with the human HER2+/ER- subtype and were more similar to human luminal tumors. Many of the defining characteristics of human subtypes were conserved among the mouse models. Although no single mouse model recapitulated all the expression features of a given human subtype, these shared expression features provide a common framework for an improved integration of murine mammary tumor models with human breast tumors.
      datePublished:2007-05-10T00:00:00Z
      dateModified:2007-05-10T00:00:00Z
      pageStart:1
      pageEnd:17
      license:http://creativecommons.org/licenses/by/2.0/
      sameAs:https://doi.org/10.1186/gb-2007-8-5-r76
      keywords:
         Estrogen Receptor
         Ionize Radiation
         Additional Data File
         Murine Tumor
         Human Breast Tumor
         Animal Genetics and Genomics
         Human Genetics
         Plant Genetics and Genomics
         Microbial Genetics and Genomics
         Bioinformatics
         Evolutionary Biology
      image:
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      isPartOf:
         name:Genome Biology
         issn:
            1474-760X
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            Periodical
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      publisher:
         name:BioMed Central
         logo:
            url:https://www.springernature.com/app-sn/public/images/logo-springernature.png
            type:ImageObject
         type:Organization
      author:
            name:Jason I Herschkowitz
            affiliation:
                  name:Lineberger Comprehensive Cancer Center
                  address:
                     name:Lineberger Comprehensive Cancer Center, USA
                     type:PostalAddress
                  type:Organization
                  name:Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill
                  address:
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                  address:
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            name:Victor J Weigman
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                  address:
                     name:Department of Biology and Program in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, USA
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            name:Igor Mikaelian
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                  name:University of North Carolina at Chapel Hill
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            name:Laundette P Jones
            affiliation:
                  name:Lombardi Comprehensive Cancer Center, Georgetown University
                  address:
                     name:Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington, USA
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            type:Person
            name:Shahin Assefnia
            affiliation:
                  name:Lombardi Comprehensive Cancer Center, Georgetown University
                  address:
                     name:Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington, USA
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            type:Person
            name:Subhashini Chandrasekharan
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                  name:University of North Carolina at Chapel Hill
                  address:
                     name:Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, USA
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            name:Michael G Backlund
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            name:Yuzhi Yin
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            name:Andrey I Khramtsov
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                  name:University of Chicago
                  address:
                     name:Department of Pathology, University of Chicago, Chicago, USA
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Roy Bastein
            affiliation:
                  name:University of Utah School of Medicine
                  address:
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            type:Person
            name:John Quackenbush
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                  address:
                     name:Department of Pathology, University of Utah School of Medicine, Salt Lake City, USA
                     type:PostalAddress
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            type:Person
            name:Robert I Glazer
            affiliation:
                  name:Lombardi Comprehensive Cancer Center, Georgetown University
                  address:
                     name:Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington, USA
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            name:Powel H Brown
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                  name:Baylor College of Medicine
                  address:
                     name:Baylor College of Medicine, Houston, USA
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            name:Jeffrey E Green
            affiliation:
                  name:Transgenic Oncogenesis Group, Laboratory of Cancer Biology and Genetics
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                     name:Transgenic Oncogenesis Group, Laboratory of Cancer Biology and Genetics, USA
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            type:Person
            name:Levy Kopelovich
            affiliation:
                  name:Chemoprevention Agent Development Research Group, National Cancer Institute
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                     name:Chemoprevention Agent Development Research Group, National Cancer Institute, Bethesda, USA
                     type:PostalAddress
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            type:Person
            name:Priscilla A Furth
            affiliation:
                  name:Lombardi Comprehensive Cancer Center, Georgetown University
                  address:
                     name:Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington, USA
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Juan P Palazzo
            affiliation:
                  name:Thomas Jefferson University
                  address:
                     name:Department of Pathology, Thomas Jefferson University, Philadelphia, USA
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Olufunmilayo I Olopade
            affiliation:
                  name:University of Chicago
                  address:
                     name:Section of Hematology/Oncology, Department of Medicine, Committees on Genetics and Cancer Biology, University of Chicago, Chicago, USA
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Philip S Bernard
            affiliation:
                  name:University of Utah School of Medicine
                  address:
                     name:Department of Pathology, University of Utah School of Medicine, Salt Lake City, USA
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Gary A Churchill
            affiliation:
                  name:The Jackson Laboratory
                  address:
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