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We are analyzing https://link.springer.com/article/10.1186/gb-2005-6-3-r22.

Title:
A DNA microarray survey of gene expression in normal human tissues | Genome Biology
Description:
Background Numerous studies have used DNA microarrays to survey gene expression in cancer and other disease states. Comparatively little is known about the genes expressed across the gamut of normal human tissues. Systematic studies of global gene-expression patterns, by linking variation in the expression of specific genes to phenotypic variation in the cells or tissues in which they are expressed, provide clues to the molecular organization of diverse cells and to the potential roles of the genes. Results Here we describe a systematic survey of gene expression in 115 human tissue samples representing 35 different tissue types, using cDNA microarrays representing approximately 26,000 different human genes. Unsupervised hierarchical cluster analysis of the gene-expression patterns in these tissues identified clusters of genes with related biological functions and grouped the tissue specimens in a pattern that reflected their anatomic locations, cellular compositions or physiologic functions. In unsupervised and supervised analyses, tissue-specific patterns of gene expression were readily discernable. By comparative hybridization to normal genomic DNA, we were also able to estimate transcript abundances for expressed genes. Conclusions Our dataset provides a baseline for comparison to diseased tissues, and will aid in the identification of tissue-specific functions. In addition, our analysis identifies potential molecular markers for detection of injury to specific organs and tissues, and provides a foundation for selection of potential targets for selective anticancer therapy.
Website Age:
28 years and 1 months (reg. 1997-05-29).

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Custom-built

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Traffic Estimate {๐Ÿ“ˆ}

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๐ŸŒ  Phenomenal Traffic: 5M - 10M visitors per month


Based on our best estimate, this website will receive around 7,642,828 visitors per month in the current month.

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How Does Link.springer.com Make Money? {๐Ÿ’ธ}

We see no obvious way the site makes money.

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Keywords {๐Ÿ”}

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Topics {โœ’๏ธ}

articleย numberย r22 single prostate specimen prostate-specific gene-expression cluster article download pdf dna microarray-based survey demonstrate tissue-specific patterns versus genomic dna stanford microarray database centered gene-expression ratios genome-wide profiling cdna-microarray-based survey high-density oligonucleotide arrays g-protein-coupled receptor g-protein coupled receptor identified tissue-specific patterns 'common reference' mrna common reference mrna normal genomic dna gene-expression features related modified t-test statistic single-channel fluorescence intensities full size image tissue-specific genes identified global gene-expression patterns regulating cellular/tissue differentiation genome-wide analysis specific biological processes identify tissue-specific genes selected gene-expression clusters normal tissue specimens dna microarray data agent-based clustering approach tissue specific transcripts figure showing expression tissue-specific patterns dna microarray survey complementary dna microarray gene expression profiling gene-expression profiling tissue-specific features related biological functions estimating transcript abundance common reference compared tissue-specific structures prostate sample mrna 1186/gb-2005-6-9-404 privacy choices/manage cookies female genitourinary tissues estimating transcript abundances ratio-fold change scale

Schema {๐Ÿ—บ๏ธ}

WebPage:
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         headline:A DNA microarray survey of gene expression in normal human tissues
         description:Numerous studies have used DNA microarrays to survey gene expression in cancer and other disease states. Comparatively little is known about the genes expressed across the gamut of normal human tissues. Systematic studies of global gene-expression patterns, by linking variation in the expression of specific genes to phenotypic variation in the cells or tissues in which they are expressed, provide clues to the molecular organization of diverse cells and to the potential roles of the genes. Here we describe a systematic survey of gene expression in 115 human tissue samples representing 35 different tissue types, using cDNA microarrays representing approximately 26,000 different human genes. Unsupervised hierarchical cluster analysis of the gene-expression patterns in these tissues identified clusters of genes with related biological functions and grouped the tissue specimens in a pattern that reflected their anatomic locations, cellular compositions or physiologic functions. In unsupervised and supervised analyses, tissue-specific patterns of gene expression were readily discernable. By comparative hybridization to normal genomic DNA, we were also able to estimate transcript abundances for expressed genes. Our dataset provides a baseline for comparison to diseased tissues, and will aid in the identification of tissue-specific functions. In addition, our analysis identifies potential molecular markers for detection of injury to specific organs and tissues, and provides a foundation for selection of potential targets for selective anticancer therapy.
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            Normal Human Tissue
            Specific Biological Process
            Stanford Microarray Database
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            Animal Genetics and Genomics
            Human Genetics
            Plant Genetics and Genomics
            Microbial Genetics and Genomics
            Bioinformatics
            Evolutionary Biology
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      headline:A DNA microarray survey of gene expression in normal human tissues
      description:Numerous studies have used DNA microarrays to survey gene expression in cancer and other disease states. Comparatively little is known about the genes expressed across the gamut of normal human tissues. Systematic studies of global gene-expression patterns, by linking variation in the expression of specific genes to phenotypic variation in the cells or tissues in which they are expressed, provide clues to the molecular organization of diverse cells and to the potential roles of the genes. Here we describe a systematic survey of gene expression in 115 human tissue samples representing 35 different tissue types, using cDNA microarrays representing approximately 26,000 different human genes. Unsupervised hierarchical cluster analysis of the gene-expression patterns in these tissues identified clusters of genes with related biological functions and grouped the tissue specimens in a pattern that reflected their anatomic locations, cellular compositions or physiologic functions. In unsupervised and supervised analyses, tissue-specific patterns of gene expression were readily discernable. By comparative hybridization to normal genomic DNA, we were also able to estimate transcript abundances for expressed genes. Our dataset provides a baseline for comparison to diseased tissues, and will aid in the identification of tissue-specific functions. In addition, our analysis identifies potential molecular markers for detection of injury to specific organs and tissues, and provides a foundation for selection of potential targets for selective anticancer therapy.
      datePublished:2005-02-14T00:00:00Z
      dateModified:2005-02-14T00:00:00Z
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         Additional Data File
         Normal Human Tissue
         Specific Biological Process
         Stanford Microarray Database
         Normal Tissue Specimen
         Animal Genetics and Genomics
         Human Genetics
         Plant Genetics and Genomics
         Microbial Genetics and Genomics
         Bioinformatics
         Evolutionary Biology
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                     name:Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, USA
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            name:Stanford University School of Medicine
            address:
               name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
               type:PostalAddress
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            name:Stanford University School of Medicine
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            address:
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               type:PostalAddress
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      name:Anand Sethuraman
      affiliation:
            name:Stanford University
            address:
               name:Department of Genetics, Stanford University, Stanford, USA
               type:PostalAddress
            type:Organization
      name:Matt van de Rijn
      affiliation:
            name:Stanford University School of Medicine
            address:
               name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
               type:PostalAddress
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      name:David Botstein
      affiliation:
            name:Stanford University
            address:
               name:Department of Genetics, Stanford University, Stanford, USA
               type:PostalAddress
            type:Organization
            name:Princeton University
            address:
               name:Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, USA
               type:PostalAddress
            type:Organization
      name:Patrick O Brown
      affiliation:
            name:Stanford University School of Medicine
            address:
               name:Department of Biochemistry, Stanford University School of Medicine, Stanford, USA
               type:PostalAddress
            type:Organization
            name:Stanford University School of Medicine
            address:
               name:Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, USA
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:Jonathan R Pollack
      affiliation:
            name:Stanford University School of Medicine
            address:
               name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
               type:PostalAddress
            type:Organization
      email:[email protected]
PostalAddress:
      name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
      name:Department of Biochemistry, Stanford University School of Medicine, Stanford, USA
      name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
      name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
      name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
      name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
      name:Department of Genetics, Stanford University, Stanford, USA
      name:Department of Pathology, Stanford University School of Medicine, Stanford, USA
      name:Department of Genetics, Stanford University, Stanford, USA
      name:Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, USA
      name:Department of Biochemistry, Stanford University School of Medicine, Stanford, USA
      name:Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, USA
      name:Department of Pathology, Stanford University School of Medicine, Stanford, USA

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