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Keywords {🔍}

software, data, bioconductor, packages, development, project, package, analysis, code, system, cbb, research, statistical, tools, access, users, methods, computational, projects, metadata, documentation, google, scholar, bioinformatics, expression, work, open, specific, developers, programming, user, biology, annotation, class, information, biological, design, article, computing, resources, gene, bioperl, number, language, infrastructure, distribution, genes, exprset, perl, scientific,

Topics {✒️}

org/howto/software-proj-mgmt-howto] torvalds acute lymphocytic leukemia org/howto/software-release-practice-howto/index friedrich-alexander-universität erlangen-nürnberg org/issues/issue3_3/raymond/index org/issues/issue6_11/dafermos/index wolfgang huber gene expression profile message-passing interface portable document format article number r80 huge open-source movement dana-farber cancer institute including moderated t-statistics family-wise error rate object-oriented programming methodology article download pdf ignore low-level structures high-level interpreted language open-source computing environment object-oriented programming support primary software-related activities primarily command-line oriented constructing annotation-based subsets org/tr/soap/] stein privacy choices/manage cookies array-based expression measurements high-level analysis manipulations gnu/linux combination sparked low-level information structures web services format holm-adjusted p-values biometrie und epidemiologie high-throughput assays low-level processing software moderated t-test open-source license actual command/output sequence portable source code platform-independent format technical document authoring graphical user interface authors’ original file open-source software function-oriented manual pages object-oriented programming unix operating system portable interpreted code open-source environment open-source projects

Questions {❓}

• So why then should we adopt a standard such as XML?

Schema {🗺️}

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         type:PostalAddress
      name:The Walter and Eliza Hall Institute of Medical Research
      address:
         name:Division of Genetics and Bioinformatics, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia
         type:PostalAddress
      name:University of Iowa
      address:
         name:Department of Statistics and Actuarial Science, University of Iowa, Iowa City, USA
         type:PostalAddress
      name:Univerisity of California, San Francisco
      address:
         name:Center for Bioinformatics and Molecular Biostatistics, Univerisity of California, San Francisco, San Francisco, USA
         type:PostalAddress
      name:Dana-Farber Cancer Institute
      address:
         name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA
         type:PostalAddress
ImageObject:
      url:https://www.springernature.com/app-sn/public/images/logo-springernature.png
Person:
      name:Robert C Gentleman
      affiliation:
            name:Dana-Farber Cancer Institute
            address:
               name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:Vincent J Carey
      affiliation:
            name:Channing Laboratory, Brigham and Women's Hospital
            address:
               name:Channing Laboratory, Brigham and Women's Hospital, Boston, USA
               type:PostalAddress
            type:Organization
      name:Douglas M Bates
      affiliation:
            name:University of Wisconsin-Madison
            address:
               name:Department of Statistics, University of Wisconsin-Madison, Madison, USA
               type:PostalAddress
            type:Organization
      name:Ben Bolstad
      affiliation:
            name:University of California, Berkeley
            address:
               name:Division of Biostatistics, University of California, Berkeley, Berkeley, USA
               type:PostalAddress
            type:Organization
      name:Marcel Dettling
      affiliation:
            name:Seminar for Statistics LEO C16
            address:
               name:Seminar for Statistics LEO C16, ETH Zentrum, Switzerl
               type:PostalAddress
            type:Organization
      name:Sandrine Dudoit
      affiliation:
            name:University of California, Berkeley
            address:
               name:Division of Biostatistics, University of California, Berkeley, Berkeley, USA
               type:PostalAddress
            type:Organization
      name:Byron Ellis
      affiliation:
            name:Harvard University
            address:
               name:Department of Statistics, Harvard University, Cambridge, USA
               type:PostalAddress
            type:Organization
      name:Laurent Gautier
      affiliation:
            name:Technical University of Denmark
            address:
               name:Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark
               type:PostalAddress
            type:Organization
      name:Yongchao Ge
      affiliation:
            name:Mount Sinai School of Medicine
            address:
               name:Department of Biomathematical Sciences, Mount Sinai School of Medicine, New York, USA
               type:PostalAddress
            type:Organization
      name:Jeff Gentry
      affiliation:
            name:Dana-Farber Cancer Institute
            address:
               name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA
               type:PostalAddress
            type:Organization
      name:Kurt Hornik
      affiliation:
            name:TU Wien
            address:
               name:Institut für Statistik und Wahrscheinlichkeitstheorie, TU Wien, Wien, Austria
               type:PostalAddress
            type:Organization
      name:Torsten Hothorn
      affiliation:
            name:Biometrie und Epidemiologie, Friedrich-Alexander-Universität Erlangen-Nürnberg
            address:
               name:Institut für Medizininformatik, Biometrie und Epidemiologie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
               type:PostalAddress
            type:Organization
      name:Wolfgang Huber
      affiliation:
            name:DKFZ (German Cancer Research Center)
            address:
               name:Division of Molecular Genome Analysis, DKFZ (German Cancer Research Center), Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Stefano Iacus
      affiliation:
            name:University of Milan
            address:
               name:Department of Economics, University of Milan, Milan, Italy
               type:PostalAddress
            type:Organization
      name:Rafael Irizarry
      affiliation:
            name:Johns Hopkins University
            address:
               name:Department of Biostatistics, Johns Hopkins University, Baltimore, USA
               type:PostalAddress
            type:Organization
      name:Friedrich Leisch
      affiliation:
            name:TU Wien
            address:
               name:Institut für Statistik und Wahrscheinlichkeitstheorie, TU Wien, Wien, Austria
               type:PostalAddress
            type:Organization
      name:Cheng Li
      affiliation:
            name:Dana-Farber Cancer Institute
            address:
               name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA
               type:PostalAddress
            type:Organization
      name:Martin Maechler
      affiliation:
            name:Seminar for Statistics LEO C16
            address:
               name:Seminar for Statistics LEO C16, ETH Zentrum, Switzerl
               type:PostalAddress
            type:Organization
      name:Anthony J Rossini
      affiliation:
            name:University of Washington
            address:
               name:Department of Medical Education and Biomedical Informatics, University of Washington, NE Pacific, Seattle, USA
               type:PostalAddress
            type:Organization
      name:Gunther Sawitzki
      affiliation:
            name:Institut für Angewandte Mathematik
            address:
               name:Statistisches Labor, Institut für Angewandte Mathematik, Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Colin Smith
      affiliation:
            name:The Scripps Research Institute
            address:
               name:Department of Molecular Biology, The Scripps Research Institute, La Jolla, USA
               type:PostalAddress
            type:Organization
      name:Gordon Smyth
      affiliation:
            name:The Walter and Eliza Hall Institute of Medical Research
            address:
               name:Division of Genetics and Bioinformatics, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia
               type:PostalAddress
            type:Organization
      name:Luke Tierney
      affiliation:
            name:University of Iowa
            address:
               name:Department of Statistics and Actuarial Science, University of Iowa, Iowa City, USA
               type:PostalAddress
            type:Organization
      name:Jean YH Yang
      affiliation:
            name:Univerisity of California, San Francisco
            address:
               name:Center for Bioinformatics and Molecular Biostatistics, Univerisity of California, San Francisco, San Francisco, USA
               type:PostalAddress
            type:Organization
      name:Jianhua Zhang
      affiliation:
            name:Dana-Farber Cancer Institute
            address:
               name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA
               type:PostalAddress
            type:Organization
PostalAddress:
      name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA
      name:Channing Laboratory, Brigham and Women's Hospital, Boston, USA
      name:Department of Statistics, University of Wisconsin-Madison, Madison, USA
      name:Division of Biostatistics, University of California, Berkeley, Berkeley, USA
      name:Seminar for Statistics LEO C16, ETH Zentrum, Switzerl
      name:Division of Biostatistics, University of California, Berkeley, Berkeley, USA
      name:Department of Statistics, Harvard University, Cambridge, USA
      name:Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark
      name:Department of Biomathematical Sciences, Mount Sinai School of Medicine, New York, USA
      name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA
      name:Institut für Statistik und Wahrscheinlichkeitstheorie, TU Wien, Wien, Austria
      name:Institut für Medizininformatik, Biometrie und Epidemiologie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
      name:Division of Molecular Genome Analysis, DKFZ (German Cancer Research Center), Heidelberg, Germany
      name:Department of Economics, University of Milan, Milan, Italy
      name:Department of Biostatistics, Johns Hopkins University, Baltimore, USA
      name:Institut für Statistik und Wahrscheinlichkeitstheorie, TU Wien, Wien, Austria
      name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA
      name:Seminar for Statistics LEO C16, ETH Zentrum, Switzerl
      name:Department of Medical Education and Biomedical Informatics, University of Washington, NE Pacific, Seattle, USA
      name:Statistisches Labor, Institut für Angewandte Mathematik, Heidelberg, Germany
      name:Department of Molecular Biology, The Scripps Research Institute, La Jolla, USA
      name:Division of Genetics and Bioinformatics, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia
      name:Department of Statistics and Actuarial Science, University of Iowa, Iowa City, USA
      name:Center for Bioinformatics and Molecular Biostatistics, Univerisity of California, San Francisco, San Francisco, USA
      name:Department of Biostatistical Science, Dana-Farber Cancer Institute, Boston, USA

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