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Title:
Crystal structure of the conserved domain of the DC lysosomal associated membrane protein: implications for the lysosomal glycocalyx | BMC Biology
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Background The family of lysosome-associated membrane proteins (LAMP) comprises the multifunctional, ubiquitous LAMP-1 and LAMP-2, and the cell type-specific proteins DC-LAMP (LAMP-3), BAD-LAMP (UNC-46, C20orf103) and macrosialin (CD68). LAMPs have been implicated in a multitude of cellular processes, including phagocytosis, autophagy, lipid transport and aging. LAMP-2 isoform A acts as a receptor in chaperone-mediated autophagy. LAMP-2 deficiency causes the fatal Danon disease. The abundant proteins LAMP-1 and LAMP-2 are major constituents of the glycoconjugate coat present on the inside of the lysosomal membrane, the
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Keywords {🔍}
lamp, pubmed, membrane, article, google, scholar, lysosomal, proteins, cas, figure, domain, structure, dclamp, domains, protein, cell, lysosomes, cells, central, biol, coat, transmembrane, human, glycoprotein, disulfide, glycosylated, molecular, luminal, residues, loop, conserved, models, molecules, structural, βsheet, saftig, authors, data, βprism, bond, regions, membranes, model, conformation, surface, mice, chain, full, autophagy, fold,
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joern krausze & konrad büssow x-ray diffraction data lamp-1/lamp-2 double-deficient fibroblasts article download pdf open access article cd208/dendritic cell-lysosomal β-strand pairs s2/s10 present pathogen-specific antigens multi-wavelength anomalous dispersion professional antigen-presenting cells c-type lectin fold c-terminal his6-tag left-handed α-helix c-terminal transmembrane helix de saint-vis n-acetyl-glucosamine residue x-linked vacuolar cardiomyopathy o-glycosylated 'hinge' region konrad büssow type i' β-turn membrane-proximal luminal domain lamp-2a transmembrane region pseudo β-prism structures n-linked glycosylation sites top view pseudo β-prism domains β-prism fold formed adjacent β-hairpin formed late endosome c-terminal cytosolic tail saccharide receptor-binding site cosen-binker li 'back' β-sheet consists bmc struct biol fluorescence-activated cell sorting dc-lamp domain consists similar n-glycosylated domains elongated β-strand conformation luminal region comprises o-glycan attachment sites carried sialylated o-glycans privacy choices/manage cookies authors’ original file initial β-strand conformation dc-lamp crystal structure article wilke n-acetylglucosamine residue connected high dc-lamp expression mccoy aj comprehensive python-based system
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- Jentoft N: Why are proteins O-glycosylated?
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headline:Crystal structure of the conserved domain of the DC lysosomal associated membrane protein: implications for the lysosomal glycocalyx
description:The family of lysosome-associated membrane proteins (LAMP) comprises the multifunctional, ubiquitous LAMP-1 and LAMP-2, and the cell type-specific proteins DC-LAMP (LAMP-3), BAD-LAMP (UNC-46, C20orf103) and macrosialin (CD68). LAMPs have been implicated in a multitude of cellular processes, including phagocytosis, autophagy, lipid transport and aging. LAMP-2 isoform A acts as a receptor in chaperone-mediated autophagy. LAMP-2 deficiency causes the fatal Danon disease. The abundant proteins LAMP-1 and LAMP-2 are major constituents of the glycoconjugate coat present on the inside of the lysosomal membrane, the 'lysosomal glycocalyx'. The LAMP family is characterized by a conserved domain of 150 to 200 amino acids with two disulfide bonds. The crystal structure of the conserved domain of human DC-LAMP was solved. It is the first high-resolution structure of a heavily glycosylated lysosomal membrane protein. The structure represents a novel β-prism fold formed by two β-sheets bent by β-bulges and connected by a disulfide bond. Flexible loops and a hydrophobic pocket represent possible sites of molecular interaction. Computational models of the glycosylated luminal regions of LAMP-1 and LAMP-2 indicate that the proteins adopt a compact conformation in close proximity to the lysosomal membrane. The models correspond to the thickness of the lysosomal glycoprotein coat of only 5 to 12 nm, according to electron microscopy. The conserved luminal domain of lysosome-associated membrane proteins forms a previously unknown β-prism fold. Insights into the structure of the lysosomal glycoprotein coat were obtained by computational models of the LAMP-1 and LAMP-2 luminal regions.
datePublished:2012-07-19T00:00:00Z
dateModified:2012-07-19T00:00:00Z
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keywords:
Transmembrane Helix
Lysosomal Membrane
Late Endosome
Luminal Domain
Luminal Region
Life Sciences
general
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headline:Crystal structure of the conserved domain of the DC lysosomal associated membrane protein: implications for the lysosomal glycocalyx
description:The family of lysosome-associated membrane proteins (LAMP) comprises the multifunctional, ubiquitous LAMP-1 and LAMP-2, and the cell type-specific proteins DC-LAMP (LAMP-3), BAD-LAMP (UNC-46, C20orf103) and macrosialin (CD68). LAMPs have been implicated in a multitude of cellular processes, including phagocytosis, autophagy, lipid transport and aging. LAMP-2 isoform A acts as a receptor in chaperone-mediated autophagy. LAMP-2 deficiency causes the fatal Danon disease. The abundant proteins LAMP-1 and LAMP-2 are major constituents of the glycoconjugate coat present on the inside of the lysosomal membrane, the 'lysosomal glycocalyx'. The LAMP family is characterized by a conserved domain of 150 to 200 amino acids with two disulfide bonds. The crystal structure of the conserved domain of human DC-LAMP was solved. It is the first high-resolution structure of a heavily glycosylated lysosomal membrane protein. The structure represents a novel β-prism fold formed by two β-sheets bent by β-bulges and connected by a disulfide bond. Flexible loops and a hydrophobic pocket represent possible sites of molecular interaction. Computational models of the glycosylated luminal regions of LAMP-1 and LAMP-2 indicate that the proteins adopt a compact conformation in close proximity to the lysosomal membrane. The models correspond to the thickness of the lysosomal glycoprotein coat of only 5 to 12 nm, according to electron microscopy. The conserved luminal domain of lysosome-associated membrane proteins forms a previously unknown β-prism fold. Insights into the structure of the lysosomal glycoprotein coat were obtained by computational models of the LAMP-1 and LAMP-2 luminal regions.
datePublished:2012-07-19T00:00:00Z
dateModified:2012-07-19T00:00:00Z
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Transmembrane Helix
Lysosomal Membrane
Late Endosome
Luminal Domain
Luminal Region
Life Sciences
general
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