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Keywords {🔍}

cancer, lung, dna, methylation, article, shox, pubmed, google, scholar, patients, assay, tumor, clinical, samples, pcr, cell, cas, bronchial, analysis, diagnosis, aspirates, study, realtime, sample, marker, bronchoscopy, test, disease, quantification, table, figure, research, biomarker, suspected, dmh, performance, gene, diagnostic, methylated, squamous, results, specificity, markers, central, berlin, germany, detection, data, information, based,

Topics {✒️}

open access article real-time quantitative pcr real-time pcr assay real-time pcr amplicon pre-publication history genome-wide methylation profiling real-time pcr assays shox-related homeobox gene article download pdf high-density oligonucleotide microarray normal/benign lung samples total quantification assay real-time pcr sybr green assay dna methylation-based biomarkers methylation quantification assay lung cancer tissue dna methylation markers cancer-specific genomic instability cytosine methylation profiles nested case-control study modified tissue protocol cancer research centre bmc pulm med shox2 methylation level quantitect multiplex kit genetic markers applying lower cut-offs privacy choices/manage cookies lung cancer based grote hj infektiologie und pneumologie total input dna normal lung tissues additional diagnostic tools lung cancer adjunct repeated ct-scan suspected lung cancer false positive rate full size image lung cancer samples lung cancer tissues differential methylation hybridization sample quality control cancer cell lines lung specific analyte methylation-specific blockers background dna methylation additional diagnostic procedures squamous cell carcinomas

Questions {❓}

• Abate-Shen C: Deregulated homeobox gene expression in cancer: cause or consequence?
• Grote HJ, Schmiemann V, Sarbia M, Böcking A: DNA extraction from bronchial aspirates for molecular cytology: which method to take?

Schema {🗺️}

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         headline:SHOX2 DNA Methylation is a Biomarker for the diagnosis of lung cancer based on bronchial aspirates
         description:This study aimed to show that SHOX2 DNA methylation is a tumor marker in patients with suspected lung cancer by using bronchial fluid aspirated during bronchoscopy. Such a biomarker would be clinically valuable, especially when, following the first bronchoscopy, a final diagnosis cannot be established by histology or cytology. A test with a low false positive rate can reduce the need for further invasive and costly procedures and ensure early treatment. Marker discovery was carried out by differential methylation hybridization (DMH) and real-time PCR. The real-time PCR based HeavyMethyl technology was used for quantitative analysis of DNA methylation of SHOX2 using bronchial aspirates from two clinical centres in a case-control study. Fresh-frozen and Saccomanno-fixed samples were used to show the tumor marker performance in different sample types of clinical relevance. Valid measurements were obtained from a total of 523 patient samples (242 controls, 281 cases). DNA methylation of SHOX2 allowed to distinguish between malignant and benign lung disease, i.e. abscesses, infections, obstructive lung diseases, sarcoidosis, scleroderma, stenoses, at high specificity (68% sensitivity [95% CI 62-73%], 95% specificity [95% CI 91-97%]). Hypermethylation of SHOX2 in bronchial aspirates appears to be a clinically useful tumor marker for identifying subjects with lung carcinoma, especially if histological and cytological findings after bronchoscopy are ambiguous.
         datePublished:2010-11-03T00:00:00Z
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            Surgical Oncology
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      headline:SHOX2 DNA Methylation is a Biomarker for the diagnosis of lung cancer based on bronchial aspirates
      description:This study aimed to show that SHOX2 DNA methylation is a tumor marker in patients with suspected lung cancer by using bronchial fluid aspirated during bronchoscopy. Such a biomarker would be clinically valuable, especially when, following the first bronchoscopy, a final diagnosis cannot be established by histology or cytology. A test with a low false positive rate can reduce the need for further invasive and costly procedures and ensure early treatment. Marker discovery was carried out by differential methylation hybridization (DMH) and real-time PCR. The real-time PCR based HeavyMethyl technology was used for quantitative analysis of DNA methylation of SHOX2 using bronchial aspirates from two clinical centres in a case-control study. Fresh-frozen and Saccomanno-fixed samples were used to show the tumor marker performance in different sample types of clinical relevance. Valid measurements were obtained from a total of 523 patient samples (242 controls, 281 cases). DNA methylation of SHOX2 allowed to distinguish between malignant and benign lung disease, i.e. abscesses, infections, obstructive lung diseases, sarcoidosis, scleroderma, stenoses, at high specificity (68% sensitivity [95% CI 62-73%], 95% specificity [95% CI 91-97%]). Hypermethylation of SHOX2 in bronchial aspirates appears to be a clinically useful tumor marker for identifying subjects with lung carcinoma, especially if histological and cytological findings after bronchoscopy are ambiguous.
      datePublished:2010-11-03T00:00:00Z
      dateModified:2010-11-03T00:00:00Z
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         Normal Lung Tissue
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         Quantification Assay
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         Oncology
         Surgical Oncology
         Health Promotion and Disease Prevention
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         general
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            name:Charité-Universitätsmedizin
            address:
               name:Medizinische Klinik m.S. Infektiologie und Pneumologie, Charité-Universitätsmedizin, Berlin, Germany
               type:PostalAddress
            type:Organization
      name:Ulrike Wille
      affiliation:
            name:Berlin Institute of Technology, Institute for Biotechnology
            address:
               name:Berlin Institute of Technology, Institute for Biotechnology, Berlin, Germany
               type:PostalAddress
            type:Organization
      name:Triantafillos Liloglou
      affiliation:
            name:University of Liverpool Cancer Research Centre
            address:
               name:Roy Castle Lung Cancer Research Programme, University of Liverpool Cancer Research Centre, Liverpool, UK
               type:PostalAddress
            type:Organization
      name:Olaide Raji
      affiliation:
            name:University of Liverpool Cancer Research Centre
            address:
               name:Roy Castle Lung Cancer Research Programme, University of Liverpool Cancer Research Centre, Liverpool, UK
               type:PostalAddress
            type:Organization
      name:Martin Walshaw
      affiliation:
            name:Liverpool Heart & Chest Hospital NHS Trust
            address:
               name:Liverpool Heart & Chest Hospital NHS Trust, Thomas Drive, UK
               type:PostalAddress
            type:Organization
      name:Michael Fleischhacker
      affiliation:
            name:Charité-Universitätsmedizin
            address:
               name:Medizinische Klinik m.S. Hämatologie Onkologie, Charité-Universitätsmedizin, Berlin, Germany
               type:PostalAddress
            type:Organization
      name:Christian Witt
      affiliation:
            name:Charité-Universitätsmedizin
            address:
               name:Medizinische Klinik m.S. Infektiologie und Pneumologie, Charité-Universitätsmedizin, Berlin, Germany
               type:PostalAddress
            type:Organization
      name:John K Field
      affiliation:
            name:University of Liverpool Cancer Research Centre
            address:
               name:Roy Castle Lung Cancer Research Programme, University of Liverpool Cancer Research Centre, Liverpool, UK
               type:PostalAddress
            type:Organization
      email:[email protected]
PostalAddress:
      name:Universitätsklinik und Poliklinik für Innere Medizin I, Universitätsklinikum Halle (Saale), Halle, Germany
      name:Metanomics Health GmbH, Berlin, Germany
      name:Epigenomics AG, Berlin, Germany
      name:Epigenomics AG, Berlin, Germany
      name:Theracode GmbH, Germany
      name:Bavarian Nordic GmbH, Berlin, Germany
      name:Epigenomics AG, Berlin, Germany
      name:Epigenomics AG, Berlin, Germany
      name:Epigenomics AG, Berlin, Germany
      name:Epigenomics AG, Berlin, Germany
      name:Epigenomics AG, Berlin, Germany
      name:Medizinische Klinik m.S. Infektiologie und Pneumologie, Charité-Universitätsmedizin, Berlin, Germany
      name:Berlin Institute of Technology, Institute for Biotechnology, Berlin, Germany
      name:Roy Castle Lung Cancer Research Programme, University of Liverpool Cancer Research Centre, Liverpool, UK
      name:Roy Castle Lung Cancer Research Programme, University of Liverpool Cancer Research Centre, Liverpool, UK
      name:Liverpool Heart & Chest Hospital NHS Trust, Thomas Drive, UK
      name:Medizinische Klinik m.S. Hämatologie Onkologie, Charité-Universitätsmedizin, Berlin, Germany
      name:Medizinische Klinik m.S. Infektiologie und Pneumologie, Charité-Universitätsmedizin, Berlin, Germany
      name:Roy Castle Lung Cancer Research Programme, University of Liverpool Cancer Research Centre, Liverpool, UK

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