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Title:
Suggestive evidence of associations between liver X receptor β polymorphisms with type 2 diabetes mellitus and obesity in three cohort studies: HUNT2 (Norway), MONICA (France) and HELENA (Europe) | BMC Medical Genetics
Description:
Background The liver X receptors (LXR) α and β regulate lipid and carbohydrate homeostasis and inflammation. Lxrβ -/- mice are glucose intolerant and at the same time lean. We aimed to assess the associations between single nucleotide polymorphisms (SNPs) in LXRβ and risk of type 2 diabetes mellitus (T2DM), obesity and related traits in 3 separate cohort studies. Methods Twenty LXRβ SNPs were identified by sequencing and genotyped in the HUNT2 adult nested case-control study for T2DM (n = 835 cases/1986 controls). Five tag-SNPs (rs17373080, rs2695121, rs56151148, rs2303044 and rs3219281), covering 99.3% of the entire common genetic variability of the LXRβ gene were identified and genotyped in the French MONICA adult study (n = 2318) and the European adolescent HELENA cross-sectional study (n = 1144). In silico and in vitro functionality studies were performed. Results We identified suggestive or significant associations between rs17373080 and the risk of (i) T2DM in HUNT2 (OR = 0.82, p = 0.03), (ii) obesity in MONICA (OR = 1.26, p = 0.05) and (iii) overweight/obesity in HELENA (OR = 1.59, p = 0.002). An intron 4 SNP (rs28514894, a perfect proxy for rs17373080) could potentially create binding sites for hepatic nuclear factor 4 alpha (HNF4α) and nuclear factor 1 (NF1). The C allele of rs28514894 was associated with ~1.25-fold higher human LXRβ basal promoter activity in vitro. However, no differences between alleles in terms of DNA binding and reporter gene transactivation by HNF4α or NF1 were observed. Conclusions Our results suggest that rs17373080 in LXRβ is associated with T2DM and obesity, maybe via altered LXRβ expression.
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Keywords {š}
lxrβ, study, snps, allele, article, pubmed, google, scholar, gene, table, hunt, subjects, cas, obesity, tdm, individuals, monica, binding, association, cells, associations, liver, helena, studies, glucose, oslo, diabetes, risk, norway, nuclear, higher, expression, vector, lower, levels, data, hnfα, insulin, samples, type, sequencing, performed, university, versus, activity, file, jeg, figure, receptor, receptors,
Topics {āļø}
pcmv6-xl4-hnf4α expression vector open access article north-east-south gradient anti-ha-mouse antibody binding nord-trondelag health surveys nord-trøndelag county council receptor-beta-induced increases 6alpha-hydroxy bile acids pre-publication history glucose-stimulated insulin secretion nf1c protein-oligonucleotide complex nf1c protein-oligonucleotide complexes adolescence-cross sectional study adolescence cross-sectional study informed consent form lipid-activated nuclear receptors lower homa-ir index empty basic-pgl3 vector helena cross-sectional study higher homa-ir index obesity-/t2dm-related quantitative phenotypes transfected prl-cmv vector anti-ha tag antibody genome-wide association studies significant inter-group differences medical research ethics lxr agonists' anti-atherosclerotic bmc med genet lxrβ transcription level t2dm-related quantitative phenotypes javier romeo article download pdf orphan nuclear receptors norwegian regional committee article number 144 t2dm case-control individuals lxrβ snp-disorder association hormone laboratory entire genetic variability privacy choices/manage cookies case-control study relevant transcription factor common genetic polymorphisms universitaire de lille nuclear receptors involved case fatality rates empty basic-pgl3 human jeg3 choriocarcinoma jean dallongeville & aline meirhaeghe potential therapeutic agents
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headline:Suggestive evidence of associations between liver X receptor β polymorphisms with type 2 diabetes mellitus and obesity in three cohort studies: HUNT2 (Norway), MONICA (France) and HELENA (Europe)
description:The liver X receptors (LXR) α and β regulate lipid and carbohydrate homeostasis and inflammation. Lxrβ
-/-
mice are glucose intolerant and at the same time lean. We aimed to assess the associations between single nucleotide polymorphisms (SNPs) in LXRβ and risk of type 2 diabetes mellitus (T2DM), obesity and related traits in 3 separate cohort studies. Twenty LXRβ SNPs were identified by sequencing and genotyped in the HUNT2 adult nested case-control study for T2DM (n = 835 cases/1986 controls). Five tag-SNPs (rs17373080, rs2695121, rs56151148, rs2303044 and rs3219281), covering 99.3% of the entire common genetic variability of the LXRβ gene were identified and genotyped in the French MONICA adult study (n = 2318) and the European adolescent HELENA cross-sectional study (n = 1144). In silico and in vitro functionality studies were performed. We identified suggestive or significant associations between rs17373080 and the risk of (i) T2DM in HUNT2 (OR = 0.82, p = 0.03), (ii) obesity in MONICA (OR = 1.26, p = 0.05) and (iii) overweight/obesity in HELENA (OR = 1.59, p = 0.002). An intron 4 SNP (rs28514894, a perfect proxy for rs17373080) could potentially create binding sites for hepatic nuclear factor 4 alpha (HNF4α) and nuclear factor 1 (NF1). The C allele of rs28514894 was associated with ~1.25-fold higher human LXRβ basal promoter activity in vitro. However, no differences between alleles in terms of DNA binding and reporter gene transactivation by HNF4α or NF1 were observed. Our results suggest that rs17373080 in LXRβ is associated with T2DM and obesity, maybe via altered LXRβ expression.
datePublished:2010-10-12T00:00:00Z
dateModified:2010-10-12T00:00:00Z
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Allelic Form
JEG3 Cell
HUNT2 Study
Hepatic Nuclear Factor
Lower Plasma Glucose Level
Human Genetics
Cytogenetics
Gene Function
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headline:Suggestive evidence of associations between liver X receptor β polymorphisms with type 2 diabetes mellitus and obesity in three cohort studies: HUNT2 (Norway), MONICA (France) and HELENA (Europe)
description:The liver X receptors (LXR) α and β regulate lipid and carbohydrate homeostasis and inflammation. Lxrβ
-/-
mice are glucose intolerant and at the same time lean. We aimed to assess the associations between single nucleotide polymorphisms (SNPs) in LXRβ and risk of type 2 diabetes mellitus (T2DM), obesity and related traits in 3 separate cohort studies. Twenty LXRβ SNPs were identified by sequencing and genotyped in the HUNT2 adult nested case-control study for T2DM (n = 835 cases/1986 controls). Five tag-SNPs (rs17373080, rs2695121, rs56151148, rs2303044 and rs3219281), covering 99.3% of the entire common genetic variability of the LXRβ gene were identified and genotyped in the French MONICA adult study (n = 2318) and the European adolescent HELENA cross-sectional study (n = 1144). In silico and in vitro functionality studies were performed. We identified suggestive or significant associations between rs17373080 and the risk of (i) T2DM in HUNT2 (OR = 0.82, p = 0.03), (ii) obesity in MONICA (OR = 1.26, p = 0.05) and (iii) overweight/obesity in HELENA (OR = 1.59, p = 0.002). An intron 4 SNP (rs28514894, a perfect proxy for rs17373080) could potentially create binding sites for hepatic nuclear factor 4 alpha (HNF4α) and nuclear factor 1 (NF1). The C allele of rs28514894 was associated with ~1.25-fold higher human LXRβ basal promoter activity in vitro. However, no differences between alleles in terms of DNA binding and reporter gene transactivation by HNF4α or NF1 were observed. Our results suggest that rs17373080 in LXRβ is associated with T2DM and obesity, maybe via altered LXRβ expression.
datePublished:2010-10-12T00:00:00Z
dateModified:2010-10-12T00:00:00Z
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Allelic Form
JEG3 Cell
HUNT2 Study
Hepatic Nuclear Factor
Lower Plasma Glucose Level
Human Genetics
Cytogenetics
Gene Function
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name:Department of Nutrition, Faculty of Medicine, University of Oslo, Oslo, Norway
type:PostalAddress
type:Organization
name:Jean FerriĆØres
affiliation:
name:Toulouse University School of Medicine, Rangueil Hospital
address:
name:Department of Cardiology, Toulouse University School of Medicine, Rangueil Hospital, Toulouse, France
type:PostalAddress
type:Organization
name:Philippe Amouyel
affiliation:
name:Univ. Lille Nord de France; UDSL
address:
name:INSERM, U744; Institut Pasteur de Lille, Univ. Lille Nord de France; UDSL, Lille, France
type:PostalAddress
type:Organization
name:Sigbjorn Lien
affiliation:
name:The Norwegian University of Life Sciences
address:
name:Centre for Integrative Genetics, The Norwegian University of Life Sciences, Aas, Norway
type:PostalAddress
type:Organization
name:Javier Romeo
affiliation:
name:Spanish Scientific Research Council
address:
name:Immunonutrition group, Department of Metabolism and Nutrition, Institute Frio-ICTAN, Spanish Scientific Research Council, Madrid, Spain
type:PostalAddress
type:Organization
name:Jara ValtueƱa
affiliation:
name:Universidad PolitƩcnica de Madrid
address:
name:Facultad de Ciencias de la Actividad Fisica y del Deporte- INEF, Universidad PolitƩcnica de Madrid, Madrid, Spain
type:PostalAddress
type:Organization
name:Kurt Widhalm
affiliation:
name:Medical University of Vienna
address:
name:Department of Paediatrics, Division of Clinical Nutrition and Prevention, Medical University of Vienna, Vienna, Austria
type:PostalAddress
type:Organization
name:Jonatan R Ruiz
affiliation:
name:Karolinska Institutet
address:
name:Unit for Preventive Nutrition, Department of Biosciences and Nutrition at NOVUM, Karolinska Institutet, Stockholm, Sweden
type:PostalAddress
type:Organization
name:Jean Dallongeville
affiliation:
name:Univ. Lille Nord de France; UDSL
address:
name:INSERM, U744; Institut Pasteur de Lille, Univ. Lille Nord de France; UDSL, Lille, France
type:PostalAddress
type:Organization
name:Serena Tonstad
affiliation:
name:Oslo University Hospital, Ulleval
address:
name:Department of Preventive Medicine, Oslo University Hospital, Ulleval, Oslo, Norway
type:PostalAddress
type:Organization
name:Helge Rootwelt
affiliation:
name:Oslo University Hospital, Rikshospitalet
address:
name:Department of Medical Biochemistry, Oslo University Hospital, Rikshospitalet, Oslo, Norway
type:PostalAddress
type:Organization
name:Bente Halvorsen
affiliation:
name:Oslo University Hospital, Rikshospitalet
address:
name:Research Institute for Internal Medicine, Oslo University Hospital, Rikshospitalet, Oslo, Norway
type:PostalAddress
type:Organization
name:Marit S Nenseter
affiliation:
name:Oslo University Hospital, Rikshospitalet
address:
name:Research Institute for Internal Medicine, Oslo University Hospital, Rikshospitalet, Oslo, Norway
type:PostalAddress
type:Organization
name:Kare I Birkeland
affiliation:
name:Oslo University Hospital, Aker
address:
name:Department of Endocrinology, Oslo University Hospital, Aker, Oslo, Norway
type:PostalAddress
type:Organization
name:University of Oslo
address:
name:Faculty of Medicine, University of Oslo, Norway
type:PostalAddress
type:Organization
name:Per M Thorsby
affiliation:
name:Oslo University Hospital, Aker
address:
name:The Hormone Laboratory, Oslo University Hospital, Aker, Oslo, Norway
type:PostalAddress
type:Organization
name:Aline Meirhaeghe
affiliation:
name:Univ. Lille Nord de France; UDSL
address:
name:INSERM, U744; Institut Pasteur de Lille, Univ. Lille Nord de France; UDSL, Lille, France
type:PostalAddress
type:Organization
email:[email protected]
name:Hilde I Nebb
affiliation:
name:University of Oslo
address:
name:Department of Nutrition, Faculty of Medicine, University of Oslo, Oslo, Norway
type:PostalAddress
type:Organization
email:[email protected]
PostalAddress:
name:Department of Endocrinology, Oslo University Hospital, Aker, Oslo, Norway
name:Department of Nutrition, Faculty of Medicine, University of Oslo, Oslo, Norway
name:INSERM, U744; Institut Pasteur de Lille, Univ. Lille Nord de France; UDSL, Lille, France
name:The Lipid Clinic, Oslo University Hospital, Rikshospitalet, Oslo, Norway
name:Norwegian Medical Agency, Oslo, Norway
name:Centre for Integrative Genetics, The Norwegian University of Life Sciences, Aas, Norway
name:Department of Nutrition, Faculty of Medicine, University of Oslo, Oslo, Norway
name:Department of Cardiology, Toulouse University School of Medicine, Rangueil Hospital, Toulouse, France
name:INSERM, U744; Institut Pasteur de Lille, Univ. Lille Nord de France; UDSL, Lille, France
name:Centre for Integrative Genetics, The Norwegian University of Life Sciences, Aas, Norway
name:Immunonutrition group, Department of Metabolism and Nutrition, Institute Frio-ICTAN, Spanish Scientific Research Council, Madrid, Spain
name:Facultad de Ciencias de la Actividad Fisica y del Deporte- INEF, Universidad PolitƩcnica de Madrid, Madrid, Spain
name:Department of Paediatrics, Division of Clinical Nutrition and Prevention, Medical University of Vienna, Vienna, Austria
name:Unit for Preventive Nutrition, Department of Biosciences and Nutrition at NOVUM, Karolinska Institutet, Stockholm, Sweden
name:INSERM, U744; Institut Pasteur de Lille, Univ. Lille Nord de France; UDSL, Lille, France
name:Department of Preventive Medicine, Oslo University Hospital, Ulleval, Oslo, Norway
name:Department of Medical Biochemistry, Oslo University Hospital, Rikshospitalet, Oslo, Norway
name:Research Institute for Internal Medicine, Oslo University Hospital, Rikshospitalet, Oslo, Norway
name:Research Institute for Internal Medicine, Oslo University Hospital, Rikshospitalet, Oslo, Norway
name:Department of Endocrinology, Oslo University Hospital, Aker, Oslo, Norway
name:Faculty of Medicine, University of Oslo, Norway
name:The Hormone Laboratory, Oslo University Hospital, Aker, Oslo, Norway
name:INSERM, U744; Institut Pasteur de Lille, Univ. Lille Nord de France; UDSL, Lille, France
name:Department of Nutrition, Faculty of Medicine, University of Oslo, Oslo, Norway
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