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Keywords {🔍}

splicing, exon, genes, min, expression, pubmed, article, alternative, samples, google, scholar, additional, figure, file, rna, refseq, cas, gene, array, cancer, entries, data, gbm, events, analysis, psr, brain, rtpcr, values, cell, affymetrix, pvalues, nontumor, differential, total, hybridization, cdna, incubated, aberrant, identified, gliomaspecific, performed, significant, sample, buffer, splice, tumor, factors, reactions, change,

Topics {✒️}

semi-quantitative rt-pcr technology access/early access aberrant pre-mrna splicing open access article alternative pre-mrna splicing neuronal-specific splicing regulator glioma-predominant splice isoforms glioma-specific splicing events glioma-specific splicing event cancer-predominant splicing patterns splice regulatory cis-elements generate gbm-specific bands gbm-specific splicing events article download pdf confirmed glioma-specific splicing tissue-specific alternative splicing gbm-specific isoforms varied detectable gbm-specific splicing showed glioma-specific splicing cancer-specific alternative splicing fgfr1 glioma-specific splicing tumor-specific alternative splicing fgfr1-specific splicing switch significant glioma-specific splicing tumour-specific expressed sequences rt-pcr validations shown full size image rt-pcr analysis failed silico genome-wide assessments splicing factor sf2/asf genome-wide ests alignment central nervous system single-stranded target preparation pre-mrna splicing pre-mrna processing rt-pcr-tested genes identify cassette exon rt-pcr validation suggest gene-level rma quantifications large-scale aberrant splicing single cancer-enhancing isoform rt-pcr validations multidrug-resistant phenotype psr specific t-tests global aberrant splicing 14 gbm-specific events aberrant alternative splicing glioma-specific splicing intronic splicing silencer rt-pcr data suggested

Schema {🗺️}

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         headline:Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays
         description:Tumor-predominant splice isoforms were identified during comparative in silico sequence analysis of EST clones, suggesting that global aberrant alternative pre-mRNA splicing may be an epigenetic phenomenon in cancer. We used an exon expression array to perform an objective, genome-wide survey of glioma-specific splicing in 24 GBM and 12 nontumor brain samples. Validation studies were performed using RT-PCR on glioma cell lines, patient tumor and nontumor brain samples. In total, we confirmed 14 genes with glioma-specific splicing; seven were novel events identified by the exon expression array (A2BP1, BCAS1, CACNA1G, CLTA, KCNC2, SNCB, and TPD52L2). Our data indicate that large changes (> 5-fold) in alternative splicing are infrequent in gliomagenesis (< 3% of interrogated RefSeq entries). The lack of splicing changes may derive from the small number of splicing factors observed to be aberrantly expressed. While we observed some tumor-specific alternative splicing, the number of genes showing exclusive tumor-specific isoforms was on the order of tens, rather than the hundreds suggested previously by in silico mining. Given the important role of alternative splicing in neural differentiation, there may be selective pressure to maintain a majority of splicing events in order to retain glial-like characteristics of the tumor cells.
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            Alternative Splice
            Splice Event
            Exon Array
            Cassette Exon
            Exon Inclusion
            Life Sciences
            general
            Microarrays
            Proteomics
            Animal Genetics and Genomics
            Microbial Genetics and Genomics
            Plant Genetics and Genomics
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      headline:Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays
      description:Tumor-predominant splice isoforms were identified during comparative in silico sequence analysis of EST clones, suggesting that global aberrant alternative pre-mRNA splicing may be an epigenetic phenomenon in cancer. We used an exon expression array to perform an objective, genome-wide survey of glioma-specific splicing in 24 GBM and 12 nontumor brain samples. Validation studies were performed using RT-PCR on glioma cell lines, patient tumor and nontumor brain samples. In total, we confirmed 14 genes with glioma-specific splicing; seven were novel events identified by the exon expression array (A2BP1, BCAS1, CACNA1G, CLTA, KCNC2, SNCB, and TPD52L2). Our data indicate that large changes (> 5-fold) in alternative splicing are infrequent in gliomagenesis (< 3% of interrogated RefSeq entries). The lack of splicing changes may derive from the small number of splicing factors observed to be aberrantly expressed. While we observed some tumor-specific alternative splicing, the number of genes showing exclusive tumor-specific isoforms was on the order of tens, rather than the hundreds suggested previously by in silico mining. Given the important role of alternative splicing in neural differentiation, there may be selective pressure to maintain a majority of splicing events in order to retain glial-like characteristics of the tumor cells.
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      dateModified:2008-05-12T00:00:00Z
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         Splice Event
         Exon Array
         Cassette Exon
         Exon Inclusion
         Life Sciences
         general
         Microarrays
         Proteomics
         Animal Genetics and Genomics
         Microbial Genetics and Genomics
         Plant Genetics and Genomics
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      name:Graduate Program in Human and Molecular Genetics, University of Texas at Houston Graduate School of Biomedical Sciences, Houston, USA
      name:Department of Pathology, University of Texas M. D. Anderson Cancer Center, Houston, USA
      name:Department of Endocrine Neoplasia and Hormonal Disorders, University of Texas M. D. Anderson Cancer Center, Houston, USA
      name:Graduate Program in Human and Molecular Genetics, University of Texas at Houston Graduate School of Biomedical Sciences, Houston, USA
      name:Graduate Program in Genes and Development, University of Texas at Houston Graduate School of Biomedical Sciences, Houston, USA
      name:Graduate Program in Human and Molecular Genetics, University of Texas at Houston Graduate School of Biomedical Sciences, Houston, USA
      name:Department of Cancer Genetics, University of Texas M. D. Anderson Cancer Center, Houston, USA

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