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We are analyzing https://link.springer.com/article/10.1007/s13238-014-0102-8.

Title:
Proteomic identification and functional characterization of MYH9, Hsc70, and DNAJA1 as novel substrates of HDAC6 deacetylase activity | Protein & Cell
Description:
Histone deacetylase 6 (HDAC6), a predominantly cytoplasmic protein deacetylase, participates in a wide range of cellular processes through its deacetylase activity. However, the diverse functions of HDAC6 cannot be fully elucidated with its known substrates. In an attempt to explore the substrate diversity of HDAC6, we performed quantitative proteomic analyses to monitor changes in the abundance of protein lysine acetylation in response to HDAC6 deficiency. We identified 107 proteins with elevated acetylation in the liver of HDAC6 knockout mice. Three cytoplasmic proteins, including myosin heavy chain 9 (MYH9), heat shock cognate protein 70 (Hsc70), and dnaJ homolog subfamily A member 1 (DNAJA1), were verified to interact with HDAC6. The acetylation levels of these proteins were negatively regulated by HDAC6 both in the mouse liver and in cultured cells. Functional studies reveal that HDAC6-mediated deacetylation modulates the actin-binding ability of MYH9 and the interaction between Hsc70 and DNAJA1. These findings consolidate the notion that HDAC6 serves as a critical regulator of protein acetylation with the capability of coordinating various cellular functions.
Website Age:
28 years and 1 months (reg. 1997-05-29).

Matching Content Categories {πŸ“š}

  • Science
  • Education
  • Telecommunications

Content Management System {πŸ“}

What CMS is link.springer.com built with?

Custom-built

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Traffic Estimate {πŸ“ˆ}

What is the average monthly size of link.springer.com audience?

🌠 Phenomenal Traffic: 5M - 10M visitors per month


Based on our best estimate, this website will receive around 5,000,019 visitors per month in the current month.
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How Does Link.springer.com Make Money? {πŸ’Έ}

We find it hard to spot revenue streams.

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Keywords {πŸ”}

hdac, proteins, protein, cell, article, acetylation, google, scholar, knockout, fig, substrates, myh, antibodies, cells, hsc, dnaja, mice, wildtype, cytoplasmic, zhang, liver, analysis, mouse, deacetylase, activity, proteomic, deacetylation, lysine, lysates, histone, substrate, liu, acetylated, immunoprecipitation, mefs, performed, cytoplasm, immunoprecipitates, hdacmediated, actinbinding, tubacin, cellular, interaction, data, deacetylates, experiments, response, labeling, extracts, peptides,

Topics {βœ’οΈ}

nanoflow reverse-phase uplc-esi-ms/ms epidermal growth factor-stimulation domain-selective small-molecule inhibitor 1d lc-ms/ms analysis anti-acetyl-lysine agarose beads 2d lc-ms/ms analysis nano-hplc-ms/ms analysis lc-ms/ms analysis 1d lc-ms/ms p53 c-terminal domain rhodamine-conjugated secondary antibody label-free quantitative proteomics mhda2/mhdac6 histone-deacetylase rhodamine-conjugated secondary antibodies nucleotide/cofactor/vitamin binding lysine-acetylation proteomic analysis mixed isotope-labeled peptides anti-acetyl-lysine antibody anti-acetyl-lysine antibodies large-scale proteomic analysis high-accuracy mass spectrometry coomassie blue-stained sds-page regulates ku70-bax binding article download pdf large-scale proteomic surveys lysine-acetylated protein identification extensive 2d-lc separation hdac6-mediated acetylome dynamics time-consuming proteomic workflow hdac6-mediated deacetylation modulates multi-facet validation assays gfp-hdac6 markedly attenuated p-values indicating significance reversible lysine acetylation label-free proteomic quantification variable modifications contributed mouse embryonic fibroblasts enriched lysine-acetylated proteins enzyme-mediated modification sites quantitative proteomic analysis actin-binding protein cortactin gfp-hdac6 expression plasmid combining subcellular fractionation showed apparent colocalization full access actin-based cell movement dimethyl isotope labeling dnaja1/hsc70 chaperone pair knockout/wild-type ratios hdac6-dependent cellular processes

Schema {πŸ—ΊοΈ}

WebPage:
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         headline:Proteomic identification and functional characterization of MYH9, Hsc70, and DNAJA1 as novel substrates of HDAC6 deacetylase activity
         description:Histone deacetylase 6 (HDAC6), a predominantly cytoplasmic protein deacetylase, participates in a wide range of cellular processes through its deacetylase activity. However, the diverse functions of HDAC6 cannot be fully elucidated with its known substrates. In an attempt to explore the substrate diversity of HDAC6, we performed quantitative proteomic analyses to monitor changes in the abundance of protein lysine acetylation in response to HDAC6 deficiency. We identified 107 proteins with elevated acetylation in the liver of HDAC6 knockout mice. Three cytoplasmic proteins, including myosin heavy chain 9 (MYH9), heat shock cognate protein 70 (Hsc70), and dnaJ homolog subfamily A member 1 (DNAJA1), were verified to interact with HDAC6. The acetylation levels of these proteins were negatively regulated by HDAC6 both in the mouse liver and in cultured cells. Functional studies reveal that HDAC6-mediated deacetylation modulates the actin-binding ability of MYH9 and the interaction between Hsc70 and DNAJA1. These findings consolidate the notion that HDAC6 serves as a critical regulator of protein acetylation with the capability of coordinating various cellular functions.
         datePublished:2014-10-15T00:00:00Z
         dateModified:2014-10-15T00:00:00Z
         pageStart:42
         pageEnd:54
         sameAs:https://doi.org/10.1007/s13238-014-0102-8
         keywords:
            HDAC6
            substrate
            lysine acetylation
            quantitative proteomics
            interaction
            Biochemistry
            general
            Protein Science
            Cell Biology
            Stem Cells
            Human Genetics
            Developmental Biology
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                        name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
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                        name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                        type:PostalAddress
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                        name:Molecular Oncology Program, H. Lee Moffitt Cancer Center and Research Institute, Tampa, USA
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               name:Tso-Pang Yao
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                     name:Duke University
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                        name:Department of Pharmacology and Cancer Biology, Duke University, Durham, USA
                        type:PostalAddress
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               name:Wenqing Shui
               affiliation:
                     name:Nankai University
                     address:
                        name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                        type:PostalAddress
                     type:Organization
                     name:Tianjin Joint Academy of Biotechnology and Medicine
                     address:
                        name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
                        type:PostalAddress
                     type:Organization
               email:[email protected]
               type:Person
               name:Jun Zhou
               affiliation:
                     name:Nankai University
                     address:
                        name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
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ScholarlyArticle:
      headline:Proteomic identification and functional characterization of MYH9, Hsc70, and DNAJA1 as novel substrates of HDAC6 deacetylase activity
      description:Histone deacetylase 6 (HDAC6), a predominantly cytoplasmic protein deacetylase, participates in a wide range of cellular processes through its deacetylase activity. However, the diverse functions of HDAC6 cannot be fully elucidated with its known substrates. In an attempt to explore the substrate diversity of HDAC6, we performed quantitative proteomic analyses to monitor changes in the abundance of protein lysine acetylation in response to HDAC6 deficiency. We identified 107 proteins with elevated acetylation in the liver of HDAC6 knockout mice. Three cytoplasmic proteins, including myosin heavy chain 9 (MYH9), heat shock cognate protein 70 (Hsc70), and dnaJ homolog subfamily A member 1 (DNAJA1), were verified to interact with HDAC6. The acetylation levels of these proteins were negatively regulated by HDAC6 both in the mouse liver and in cultured cells. Functional studies reveal that HDAC6-mediated deacetylation modulates the actin-binding ability of MYH9 and the interaction between Hsc70 and DNAJA1. These findings consolidate the notion that HDAC6 serves as a critical regulator of protein acetylation with the capability of coordinating various cellular functions.
      datePublished:2014-10-15T00:00:00Z
      dateModified:2014-10-15T00:00:00Z
      pageStart:42
      pageEnd:54
      sameAs:https://doi.org/10.1007/s13238-014-0102-8
      keywords:
         HDAC6
         substrate
         lysine acetylation
         quantitative proteomics
         interaction
         Biochemistry
         general
         Protein Science
         Cell Biology
         Stem Cells
         Human Genetics
         Developmental Biology
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         name:Higher Education Press
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            name:Linlin Zhang
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                  name:Nankai University
                  address:
                     name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Shanshan Liu
            affiliation:
                  name:Nankai University
                  address:
                     name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                     type:PostalAddress
                  type:Organization
                  name:Tianjin Joint Academy of Biotechnology and Medicine
                  address:
                     name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Ningning Liu
            affiliation:
                  name:Nankai University
                  address:
                     name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Yong Zhang
            affiliation:
                  name:Nankai University
                  address:
                     name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                     type:PostalAddress
                  type:Organization
                  name:Tianjin Joint Academy of Biotechnology and Medicine
                  address:
                     name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Min Liu
            affiliation:
                  name:Nankai University
                  address:
                     name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Dengwen Li
            affiliation:
                  name:Nankai University
                  address:
                     name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Edward Seto
            affiliation:
                  name:H. Lee Moffitt Cancer Center and Research Institute
                  address:
                     name:Molecular Oncology Program, H. Lee Moffitt Cancer Center and Research Institute, Tampa, USA
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Tso-Pang Yao
            affiliation:
                  name:Duke University
                  address:
                     name:Department of Pharmacology and Cancer Biology, Duke University, Durham, USA
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Wenqing Shui
            affiliation:
                  name:Nankai University
                  address:
                     name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                     type:PostalAddress
                  type:Organization
                  name:Tianjin Joint Academy of Biotechnology and Medicine
                  address:
                     name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
                     type:PostalAddress
                  type:Organization
            email:[email protected]
            type:Person
            name:Jun Zhou
            affiliation:
                  name:Nankai University
                  address:
                     name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
                     type:PostalAddress
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         name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
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      address:
         name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
         type:PostalAddress
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      address:
         name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
         type:PostalAddress
      name:H. Lee Moffitt Cancer Center and Research Institute
      address:
         name:Molecular Oncology Program, H. Lee Moffitt Cancer Center and Research Institute, Tampa, USA
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      address:
         name:Department of Pharmacology and Cancer Biology, Duke University, Durham, USA
         type:PostalAddress
      name:Nankai University
      address:
         name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
         type:PostalAddress
      name:Tianjin Joint Academy of Biotechnology and Medicine
      address:
         name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
         type:PostalAddress
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         name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
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            address:
               name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
               type:PostalAddress
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      name:Shanshan Liu
      affiliation:
            name:Nankai University
            address:
               name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
               type:PostalAddress
            type:Organization
            name:Tianjin Joint Academy of Biotechnology and Medicine
            address:
               name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
               type:PostalAddress
            type:Organization
      name:Ningning Liu
      affiliation:
            name:Nankai University
            address:
               name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
               type:PostalAddress
            type:Organization
      name:Yong Zhang
      affiliation:
            name:Nankai University
            address:
               name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
               type:PostalAddress
            type:Organization
            name:Tianjin Joint Academy of Biotechnology and Medicine
            address:
               name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
               type:PostalAddress
            type:Organization
      name:Min Liu
      affiliation:
            name:Nankai University
            address:
               name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
               type:PostalAddress
            type:Organization
      name:Dengwen Li
      affiliation:
            name:Nankai University
            address:
               name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
               type:PostalAddress
            type:Organization
      name:Edward Seto
      affiliation:
            name:H. Lee Moffitt Cancer Center and Research Institute
            address:
               name:Molecular Oncology Program, H. Lee Moffitt Cancer Center and Research Institute, Tampa, USA
               type:PostalAddress
            type:Organization
      name:Tso-Pang Yao
      affiliation:
            name:Duke University
            address:
               name:Department of Pharmacology and Cancer Biology, Duke University, Durham, USA
               type:PostalAddress
            type:Organization
      name:Wenqing Shui
      affiliation:
            name:Nankai University
            address:
               name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
               type:PostalAddress
            type:Organization
            name:Tianjin Joint Academy of Biotechnology and Medicine
            address:
               name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:Jun Zhou
      affiliation:
            name:Nankai University
            address:
               name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
               type:PostalAddress
            type:Organization
      email:[email protected]
PostalAddress:
      name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
      name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
      name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
      name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
      name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
      name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
      name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
      name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
      name:Molecular Oncology Program, H. Lee Moffitt Cancer Center and Research Institute, Tampa, USA
      name:Department of Pharmacology and Cancer Biology, Duke University, Durham, USA
      name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China
      name:High-throughput Molecular Drug Discovery Center, Tianjin Joint Academy of Biotechnology and Medicine, Tianjin, China
      name:State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai University, Tianjin, China

External Links {πŸ”—}(131)

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