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Title:
Development and experimental validation of a machine learning-based disulfidptosis-related ferroptosis score for hepatocellular carcinoma | Apoptosis
Description:
Disulfidoptosis and ferroptosis are two distinct programmed cell death pathways that have garnered considerable attention due to their potential as therapeutic targets. However, despite their significance of these pathways, the role of disulfidoptosis-related ferroptosis genes in hepatocellular carcinoma (HCC) remains unclear. In this study, we employed a comprehensive approach that utilized various sophisticated techniques such as Pearson analysis, differential analysis, uniCox regression, lasso, ranger, and multivariable Cox regression to develop the disulfidoptosis-related ferroptosis (DRF) score. We then classified patients with HCC into high- and low-score groups to examine the association between the DRF score and various outcomes, including prognosis, functional enrichment, immune infiltration, immunotherapy, TACE sensitivity, drug sensitivity, and single-cell level function. Finally, we conducted in vitro experiments to validate the function of KIF20A. Our analysis revealed that KIF20A, G6PD, SLC7A11, and SLC2A1 were integral to constructing the DRF score. Our findings showed that patients with low DRF scores had significantly better prognoses and were more responsive to immunotherapy, TACE, and chemotherapy than those with high DRF scores. Based on our results obtained from bulk RNA-seq, single-cell RNA-seq, and in vitro experiments, we identified the cell cycle pathway as the primary distinguished factor between high-score and low-score groups. This study sheds light on the contribution of disulfidoptosis-related ferroptosis genes to the development and progression of HCC. The information gleaned from this study can be leveraged to improve our understanding of their potential as therapeutic targets for HCC treatment.
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Keywords {🔍}
pubmed, article, google, scholar, cas, central, cancer, data, cell, hepatocellular, carcinoma, ferroptosis, zhejiang, zhang, analysis, nat, cao, immune, research, jing, sun, singlecell, access, liver, chen, china, information, machine, yang, junhui, cells, tumor, hangzhou, privacy, cookies, content, apoptosis, score, cong, tiantian, pan, death, hcc, drf, immunotherapy, treatment, author, rev, biol, medicine,
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pd-1–pd-l1 immune-checkpoint blockade jun-hui sun month download article/chapter disulfidoptosis-related ferroptosis genes multimodal single-cell data single-cell rna-seq single-cell level function disulfidoptosis-related ferroptosis liver cancer article apoptosis aims full article pdf interpreting omics data immune checkpoint blockade single immune cells rna-seq data liver disease liver sensitive privacy choices/manage cookies related subjects low-dimensional data programmed cell death hepatocellular carcinoma published bulk rna-seq t-regulatory cells article zhang primary distinguished factor bayesian mixture model nonapoptotic cell death immunogenic cell death li jing combining ferroptosis induction tissue-infiltrating immune immune cell types central laboratory low-score groups machine learning tissue expression profiles holds exclusive rights zhejiang university school cell cycle pathway stromal cell populations immune checkpoint inhibitors european economic area biochim biophys acta el-deiry ws actin cytoskeleton vulnerability iron-dependent form manually curated database egln2 dna methylation early-stage nsclc
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headline:Development and experimental validation of a machine learning-based disulfidptosis-related ferroptosis score for hepatocellular carcinoma
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datePublished:2023-10-24T00:00:00Z
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HCC
Machine learning
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headline:Development and experimental validation of a machine learning-based disulfidptosis-related ferroptosis score for hepatocellular carcinoma
description:Disulfidoptosis and ferroptosis are two distinct programmed cell death pathways that have garnered considerable attention due to their potential as therapeutic targets. However, despite their significance of these pathways, the role of disulfidoptosis-related ferroptosis genes in hepatocellular carcinoma (HCC) remains unclear. In this study, we employed a comprehensive approach that utilized various sophisticated techniques such as Pearson analysis, differential analysis, uniCox regression, lasso, ranger, and multivariable Cox regression to develop the disulfidoptosis-related ferroptosis (DRF) score. We then classified patients with HCC into high- and low-score groups to examine the association between the DRF score and various outcomes, including prognosis, functional enrichment, immune infiltration, immunotherapy, TACE sensitivity, drug sensitivity, and single-cell level function. Finally, we conducted in vitro experiments to validate the function of KIF20A. Our analysis revealed that KIF20A, G6PD, SLC7A11, and SLC2A1 were integral to constructing the DRF score. Our findings showed that patients with low DRF scores had significantly better prognoses and were more responsive to immunotherapy, TACE, and chemotherapy than those with high DRF scores. Based on our results obtained from bulk RNA-seq, single-cell RNA-seq, and in vitro experiments, we identified the cell cycle pathway as the primary distinguished factor between high-score and low-score groups. This study sheds light on the contribution of disulfidoptosis-related ferroptosis genes to the development and progression of HCC. The information gleaned from this study can be leveraged to improve our understanding of their potential as therapeutic targets for HCC treatment.
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Disulfidoptosis
Ferroptosis
HCC
Machine learning
Prognosis
Cancer Research
Cell Biology
Oncology
Biochemistry
general
Virology
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