We are analyzing https://link.springer.com/article/10.1007/s00438-006-0206-9.

Title:
The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs | Molecular Genetics and Genomics
Description:
Most temperate plants tolerate both chilling and freezing temperatures whereas many species from tropical regions suffer chilling injury when exposed to temperatures slightly above freezing. Cold acclimation induces the expression of cold-regulated genes needed to protect plants against freezing stress. This induction is mediated, in part, by the CBF transcription factor family. To understand the evolution and function of this family in cereals, we identified and characterized 15 different CBF genes from hexaploid wheat. Our analyses reveal that wheat species, T. aestivum and T. monococcum, may contain up to 25 different CBF genes, and that Poaceae CBFs can be classified into 10 groups that share a common phylogenetic origin and similar structural characteristics. Six of these groups (IIIc, IIId, IVa, IVb, IVc and IVd) are found only in the Pooideae suggesting they represent the CBF response machinery that evolved recently during colonization of temperate habitats. Expression studies reveal that five of the Pooideae-specific groups display higher constitutive and low temperature inducible expression in the winter cultivar, and a diurnal regulation pattern during growth at warm temperature. The higher constitutive and inducible expression within these CBF groups is an inherited trait that may play a predominant role in the superior low temperature tolerance capacity of winter cultivars and possibly be a basis of genetic variability in freezing tolerance within the Pooideae subfamily.
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Keywords {🔍}

cbf, genes, wheat, groups, group, expression, gene, analysis, google, scholar, article, pubmed, cas, proteins, arabidopsis, cmiii, barley, species, winter, fig, plant, rice, skinner, tolerance, binding, table, dna, cultivar, cold, sequences, domain, family, plants, motif, protein, study, pcr, spring, tacbf, region, results, identified, pooideae, members, functional, show, found, suggesting, specific, shown,

Topics {✒️}

c-repeat/dehydration-responsive element fr/rpbs/cgi-bin/ressource mario houde & fathey sarhan low-temperature-responsive gene expression real-time quantitative pcr quantitative real-time pcr 16-h-day/8-h-night photoperiod ca/cgi-bin/abiotic/project article download pdf c-terminal activation domain dre-related cis element long-term cold acclimation gcc-box binding domain taqman-mgb fluorescent probe ap2 dna-binding domain c-terminal activation regions pcr thermal-cycling parameters c-terminal activation region quantitative trait loci full size image cold-inducible gene encoding c-repeat/dre cold-responsive gene expression ice–cbf–cor pathway ap2 dna-binding motif fluorescent taqman-mgb probes lone protein oscbfi-1f acetyl-coa carboxylase cbf/dreb1 proteins belong /cgi-bin/primer3/primer3_www oryza sativa oscbfi-1f duplicated α-helical net possibly triticeae-specific groups/genes specific crt/dre motifs dre cis element cold-acclimation pathway aegilops–triticum composite group cold-hardy winter wheat drought-responsive element cold acclimation induces dehydration stressed wheat cbf-independent transcriptional regulation dna-binding profile c-terminal region privacy choices/manage cookies ap2/erf superfamily encode transcription activators partially inactive factors group-related wheat cbfs cold-regulated genes needed

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         headline:The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs
         description:Most temperate plants tolerate both chilling and freezing temperatures whereas many species from tropical regions suffer chilling injury when exposed to temperatures slightly above freezing. Cold acclimation induces the expression of cold-regulated genes needed to protect plants against freezing stress. This induction is mediated, in part, by the CBF transcription factor family. To understand the evolution and function of this family in cereals, we identified and characterized 15 different CBF genes from hexaploid wheat. Our analyses reveal that wheat species, T. aestivum and T. monococcum, may contain up to 25 different CBF genes, and that Poaceae CBFs can be classified into 10 groups that share a common phylogenetic origin and similar structural characteristics. Six of these groups (IIIc, IIId, IVa, IVb, IVc and IVd) are found only in the Pooideae suggesting they represent the CBF response machinery that evolved recently during colonization of temperate habitats. Expression studies reveal that five of the Pooideae-specific groups display higher constitutive and low temperature inducible expression in the winter cultivar, and a diurnal regulation pattern during growth at warm temperature. The higher constitutive and inducible expression within these CBF groups is an inherited trait that may play a predominant role in the superior low temperature tolerance capacity of winter cultivars and possibly be a basis of genetic variability in freezing tolerance within the Pooideae subfamily.
         datePublished:2007-02-07T00:00:00Z
         dateModified:2007-02-07T00:00:00Z
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      headline:The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs
      description:Most temperate plants tolerate both chilling and freezing temperatures whereas many species from tropical regions suffer chilling injury when exposed to temperatures slightly above freezing. Cold acclimation induces the expression of cold-regulated genes needed to protect plants against freezing stress. This induction is mediated, in part, by the CBF transcription factor family. To understand the evolution and function of this family in cereals, we identified and characterized 15 different CBF genes from hexaploid wheat. Our analyses reveal that wheat species, T. aestivum and T. monococcum, may contain up to 25 different CBF genes, and that Poaceae CBFs can be classified into 10 groups that share a common phylogenetic origin and similar structural characteristics. Six of these groups (IIIc, IIId, IVa, IVb, IVc and IVd) are found only in the Pooideae suggesting they represent the CBF response machinery that evolved recently during colonization of temperate habitats. Expression studies reveal that five of the Pooideae-specific groups display higher constitutive and low temperature inducible expression in the winter cultivar, and a diurnal regulation pattern during growth at warm temperature. The higher constitutive and inducible expression within these CBF groups is an inherited trait that may play a predominant role in the superior low temperature tolerance capacity of winter cultivars and possibly be a basis of genetic variability in freezing tolerance within the Pooideae subfamily.
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         Pooideae
         CBF/DREB
         AP2/ERF
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         Low temperature
         Plant Genetics and Genomics
         Human Genetics
         Microbial Genetics and Genomics
         Animal Genetics and Genomics
         Biochemistry
         general
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