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Title:
An artificial intelligence-based deep learning algorithm for the diagnosis of diabetic neuropathy using corneal confocal microscopy: a development and validation study | Diabetologia
Description:
Aims/hypothesis Corneal confocal microscopy is a rapid non-invasive ophthalmic imaging technique that identifies peripheral and central neurodegenerative disease. Quantification of corneal sub-basal nerve plexus morphology, however, requires either time-consuming manual annotation or a less-sensitive automated image analysis approach. We aimed to develop and validate an artificial intelligence-based, deep learning algorithm for the quantification of nerve fibre properties relevant to the diagnosis of diabetic neuropathy and to compare it with a validated automated analysis program, ACCMetrics. Methods Our deep learning algorithm, which employs a convolutional neural network with data augmentation, was developed for the automated quantification of the corneal sub-basal nerve plexus for the diagnosis of diabetic neuropathy. The algorithm was trained using a high-end graphics processor unit on 1698 corneal confocal microscopy images; for external validation, it was further tested on 2137 images. The algorithm was developed to identify total nerve fibre length, branch points, tail points, number and length of nerve segments, and fractal numbers. Sensitivity analyses were undertaken to determine the AUC for ACCMetrics and our algorithm for the diagnosis of diabetic neuropathy. Results The intraclass correlation coefficients for our algorithm were superior to those for ACCMetrics for total corneal nerve fibre length (0.933 vs 0.825), mean length per segment (0.656 vs 0.325), number of branch points (0.891 vs 0.570), number of tail points (0.623 vs 0.257), number of nerve segments (0.878 vs 0.504) and fractals (0.927 vs 0.758). In addition, our proposed algorithm achieved an AUC of 0.83, specificity of 0.87 and sensitivity of 0.68 for the classification of participants without (n = 90) and with (n = 132) neuropathy (defined by the Toronto criteria). Conclusions/interpretation These results demonstrated that our deep learning algorithm provides rapid and excellent localisation performance for the quantification of corneal nerve biomarkers. This model has potential for adoption into clinical screening programmes for diabetic neuropathy. Data availability The publicly shared cornea nerve dataset (dataset 1) is available at http://bioimlab.dei.unipd.it/Corneal%20Nerve%20Tortuosity%20Data%20Set.htm and http://bioimlab.dei.unipd.it/Corneal%20Nerve%20Data%20Set.htm .
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Keywords {🔍}
corneal, neuropathy, nerve, pubmed, google, images, scholar, image, diabetes, diabetic, length, confocal, cnf, microscopy, ldla, accm, analysis, learning, ccm, dataset, segmentation, deep, study, total, results, participants, model, clinical, group, manual, points, data, central, number, university, algorithm, diagnosis, fibre, nerves, fig, dla, automated, type, lcnn, cas, peripheral, sensitivity, early, petropoulos, quantification,
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5em \mathrm{sd}=\sqrt{\frac{1}{n-1}\sum \limits_i{\left $$ \mathrm{rmse}=\sqrt{\frac{1}{ /corneal%20nerve%20tortuosity%20data%20set artificial intelligence-based dla intra-epidermal nerve fibres deep-learning-based approaches make artificial intelligence-based dlas /corneal%20nerve%20data%20set thermal thresholds/sudomotor/autonomic article download pdf artificial intelligence-based achieve full-image segmentation conventional small-fiber tests hand-crafted features increases mountain view convolutional neural network traditional machine-learning burden proposed u-net architecture diagnose small-fibre neuropathy single u-net model proposed u-net model small nerve fibres designing hand-crafted features age-related reference range multi-scale quantitative morphology small fiber damage pixel-wise segmentation map image-level segmentation result convolutional neural networks corneal confocal microscopy vivo confocal microscopy time-consuming manual annotation conventional machine-learning methods efficient pixel-wise classification small fiber neuropathy corneal nerve fibre central neurodegenerative disease deep neural networks dual-model automatic detection small-fibre dysfunction manual ground-truth analysis peripheral nerve society corneal nerve morphology unmyelinated nerve fibres nerve fiber loss davide borroni u-net networks vito romano corneal nerve segmentation nerve fibre length
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headline:An artificial intelligence-based deep learning algorithm for the diagnosis of diabetic neuropathy using corneal confocal microscopy: a development and validation study
description:Corneal confocal microscopy is a rapid non-invasive ophthalmic imaging technique that identifies peripheral and central neurodegenerative disease. Quantification of corneal sub-basal nerve plexus morphology, however, requires either time-consuming manual annotation or a less-sensitive automated image analysis approach. We aimed to develop and validate an artificial intelligence-based, deep learning algorithm for the quantification of nerve fibre properties relevant to the diagnosis of diabetic neuropathy and to compare it with a validated automated analysis program, ACCMetrics. Our deep learning algorithm, which employs a convolutional neural network with data augmentation, was developed for the automated quantification of the corneal sub-basal nerve plexus for the diagnosis of diabetic neuropathy. The algorithm was trained using a high-end graphics processor unit on 1698 corneal confocal microscopy images; for external validation, it was further tested on 2137 images. The algorithm was developed to identify total nerve fibre length, branch points, tail points, number and length of nerve segments, and fractal numbers. Sensitivity analyses were undertaken to determine the AUC for ACCMetrics and our algorithm for the diagnosis of diabetic neuropathy. The intraclass correlation coefficients for our algorithm were superior to those for ACCMetrics for total corneal nerve fibre length (0.933 vs 0.825), mean length per segment (0.656 vs 0.325), number of branch points (0.891 vs 0.570), number of tail points (0.623 vs 0.257), number of nerve segments (0.878 vs 0.504) and fractals (0.927 vs 0.758). In addition, our proposed algorithm achieved an AUC of 0.83, specificity of 0.87 and sensitivity of 0.68 for the classification of participants without (n = 90) and with (n = 132) neuropathy (defined by the Toronto criteria). These results demonstrated that our deep learning algorithm provides rapid and excellent localisation performance for the quantification of corneal nerve biomarkers. This model has potential for adoption into clinical screening programmes for diabetic neuropathy. The publicly shared cornea nerve dataset (dataset 1) is available at
http://bioimlab.dei.unipd.it/Corneal%20Nerve%20Tortuosity%20Data%20Set.htm
and
http://bioimlab.dei.unipd.it/Corneal%20Nerve%20Data%20Set.htm
.
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Corneal confocal microscopy
Corneal nerve
Deep learning
Diabetic neuropathy
Image processing and analysis
Image segmentation
Ophthalmic imaging
Small nerve fibres
Internal Medicine
Metabolic Diseases
Human Physiology
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headline:An artificial intelligence-based deep learning algorithm for the diagnosis of diabetic neuropathy using corneal confocal microscopy: a development and validation study
description:Corneal confocal microscopy is a rapid non-invasive ophthalmic imaging technique that identifies peripheral and central neurodegenerative disease. Quantification of corneal sub-basal nerve plexus morphology, however, requires either time-consuming manual annotation or a less-sensitive automated image analysis approach. We aimed to develop and validate an artificial intelligence-based, deep learning algorithm for the quantification of nerve fibre properties relevant to the diagnosis of diabetic neuropathy and to compare it with a validated automated analysis program, ACCMetrics. Our deep learning algorithm, which employs a convolutional neural network with data augmentation, was developed for the automated quantification of the corneal sub-basal nerve plexus for the diagnosis of diabetic neuropathy. The algorithm was trained using a high-end graphics processor unit on 1698 corneal confocal microscopy images; for external validation, it was further tested on 2137 images. The algorithm was developed to identify total nerve fibre length, branch points, tail points, number and length of nerve segments, and fractal numbers. Sensitivity analyses were undertaken to determine the AUC for ACCMetrics and our algorithm for the diagnosis of diabetic neuropathy. The intraclass correlation coefficients for our algorithm were superior to those for ACCMetrics for total corneal nerve fibre length (0.933 vs 0.825), mean length per segment (0.656 vs 0.325), number of branch points (0.891 vs 0.570), number of tail points (0.623 vs 0.257), number of nerve segments (0.878 vs 0.504) and fractals (0.927 vs 0.758). In addition, our proposed algorithm achieved an AUC of 0.83, specificity of 0.87 and sensitivity of 0.68 for the classification of participants without (n = 90) and with (n = 132) neuropathy (defined by the Toronto criteria). These results demonstrated that our deep learning algorithm provides rapid and excellent localisation performance for the quantification of corneal nerve biomarkers. This model has potential for adoption into clinical screening programmes for diabetic neuropathy. The publicly shared cornea nerve dataset (dataset 1) is available at
http://bioimlab.dei.unipd.it/Corneal%20Nerve%20Tortuosity%20Data%20Set.htm
and
http://bioimlab.dei.unipd.it/Corneal%20Nerve%20Data%20Set.htm
.
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keywords:
Corneal confocal microscopy
Corneal nerve
Deep learning
Diabetic neuropathy
Image processing and analysis
Image segmentation
Ophthalmic imaging
Small nerve fibres
Internal Medicine
Metabolic Diseases
Human Physiology
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address:
name:Department of Endocrinology and Diabetes, University Hospital Aintree, Liverpool, UK
type:PostalAddress
type:Organization
name:Baikai Ma
affiliation:
name:Peking University Third Hospital
address:
name:Department of Ophthalmology, Peking University Third Hospital, Beijing, China
type:PostalAddress
type:Organization
name:Vito Romano
affiliation:
name:University of Liverpool
address:
name:Department of Eye and Vision Science, University of Liverpool, Liverpool, UK
type:PostalAddress
type:Organization
name:Royal Liverpool University Hospital
address:
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
type:PostalAddress
type:Organization
name:Hong Qi
affiliation:
name:Peking University Third Hospital
address:
name:Department of Ophthalmology, Peking University Third Hospital, Beijing, China
type:PostalAddress
type:Organization
name:Maryam Ferdousi
affiliation:
name:University Hospital Aintree
address:
name:Department of Endocrinology and Diabetes, University Hospital Aintree, Liverpool, UK
type:PostalAddress
type:Organization
name:Ioannis N. Petropoulos
affiliation:
name:Weill Cornell Medicine – Qatar
address:
name:Weill Cornell Medicine – Qatar, Doha, Qatar
type:PostalAddress
type:Organization
name:Georgios Ponirakis
affiliation:
name:Weill Cornell Medicine – Qatar
address:
name:Weill Cornell Medicine – Qatar, Doha, Qatar
type:PostalAddress
type:Organization
name:Stephen Kaye
affiliation:
name:University of Liverpool
address:
name:Department of Eye and Vision Science, University of Liverpool, Liverpool, UK
type:PostalAddress
type:Organization
name:Royal Liverpool University Hospital
address:
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
type:PostalAddress
type:Organization
name:Rayaz A. Malik
affiliation:
name:Weill Cornell Medicine – Qatar
address:
name:Weill Cornell Medicine – Qatar, Doha, Qatar
type:PostalAddress
type:Organization
name:Uazman Alam
url:https://orcid.org/0000-0002-3190-1122
affiliation:
name:University of Liverpool and Aintree University Hospital NHS Foundation Trust
address:
name:Diabetes and Neuropathy Research, Department of Eye and Vision Sciences and Pain Research Institute, Institute of Ageing and Chronic Disease, University of Liverpool and Aintree University Hospital NHS Foundation Trust, Liverpool, UK
type:PostalAddress
type:Organization
name:Royal Liverpool and Broadgreen University NHS Hospital Trust
address:
name:Department of Diabetes and Endocrinology, Royal Liverpool and Broadgreen University NHS Hospital Trust, Liverpool, UK
type:PostalAddress
type:Organization
name:University of Manchester
address:
name:Division of Endocrinology, Diabetes and Gastroenterology, University of Manchester, Manchester, UK
type:PostalAddress
type:Organization
email:[email protected]
name:Yalin Zheng
url:https://orcid.org/0000-0002-7873-0922
affiliation:
name:University of Liverpool
address:
name:Department of Eye and Vision Science, University of Liverpool, Liverpool, UK
type:PostalAddress
type:Organization
name:Royal Liverpool University Hospital
address:
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
type:PostalAddress
type:Organization
email:[email protected]
PostalAddress:
name:Department of Eye and Vision Science, University of Liverpool, Liverpool, UK
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
name:Data Science Institute, Lancaster University, Lancaster, UK
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
name:Department of Ophthalmology, Riga Stradins University, Riga, Latvia
name:Department of Ophthalmology, Peking University Third Hospital, Beijing, China
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
name:Cixi Institute of Biomedical Engineering, Ningbo Institute of Industrial Technology, Chinese Academy of Sciences, Ningbo, China
name:Laboratory of Neuro Imaging, Institute for Neuroimaging and Informatics, Keck School of Medicine, University of Southern California, Los Angeles, USA
name:Department of Endocrinology and Diabetes, University Hospital Aintree, Liverpool, UK
name:Department of Ophthalmology, Peking University Third Hospital, Beijing, China
name:Department of Eye and Vision Science, University of Liverpool, Liverpool, UK
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
name:Department of Ophthalmology, Peking University Third Hospital, Beijing, China
name:Department of Endocrinology and Diabetes, University Hospital Aintree, Liverpool, UK
name:Weill Cornell Medicine – Qatar, Doha, Qatar
name:Weill Cornell Medicine – Qatar, Doha, Qatar
name:Department of Eye and Vision Science, University of Liverpool, Liverpool, UK
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
name:Weill Cornell Medicine – Qatar, Doha, Qatar
name:Diabetes and Neuropathy Research, Department of Eye and Vision Sciences and Pain Research Institute, Institute of Ageing and Chronic Disease, University of Liverpool and Aintree University Hospital NHS Foundation Trust, Liverpool, UK
name:Department of Diabetes and Endocrinology, Royal Liverpool and Broadgreen University NHS Hospital Trust, Liverpool, UK
name:Division of Endocrinology, Diabetes and Gastroenterology, University of Manchester, Manchester, UK
name:Department of Eye and Vision Science, University of Liverpool, Liverpool, UK
name:St Paul’s Eye Unit, Royal Liverpool University Hospital, Liverpool, UK
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