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article, intron, beet, sugar, mitochondrial, nad, gene, privacy, cookies, content, caryophyllales, editing, access, information, publish, search, itchoda, nishizawa, nagano, rna, hokkaido, japan, data, log, journal, research, loss, related, vulgaris, discover, springer, optional, analysis, personal, parties, policy, find, track, theoretical, applied, genetics, phylogenetic, implication, cite, kubo, mikami, explore, nadi, transcription, lost,

Topics {✒️}

plant breeding institute month download article/chapter edited rna intermediate hokkaido green-bio institute genome-wide survey mitochondrial genome related subjects closely related orders privacy choices/manage cookies full article pdf nad4-i2 intron sugar beet european economic area applied genetics aims scope submit manuscript conditions privacy policy check access instant access accepting optional cookies main content log mitochondrial genomes beta vulgaris subsp japan e-mail editing journal finder publish article theoretical nad4-i2 gene garden beet privacy policy personal data article log usage analysis books a information caryophyllales published optional cookies article cite manage preferences intron loss intron rich article itchoda data protection essential cookies cookies skip subscription content similar content beta vulgaris institution subscribe lost intron

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WebPage:
      mainEntity:
         headline:The sugar beet mitochondrial nad4 gene: an intron loss and its phylogenetic implication in the Caryophyllales
         description:The sugar beet mitochondrial gene for subunit IV of NADH dehydrogenase (nad4) has been characterized. Unlike the corresponding genes in wheat and turnip, sugar beet nad4 lacks the second intron (nad4-i2). Northern-blot analysis demonstrates transcription of the gene. A total of 19 RNA editing sites were identified in the sugar beet nad4 transcripts; interestingly, there is no editing in the region which flanks the lost intron. This observation is in favour of intron loss via homologous recombination of an edited RNA intermediate. We also found that the nad4-i2 intron is absent from the mitochondrial genomes of all examined members of the Caryophyllales, but present in the closely related orders, Polygonales and Plumbaginales, which suggests that the intron was lost in the common ancestor of the Caryophyllales.
         datePublished:
         dateModified:
         pageStart:209
         pageEnd:213
         sameAs:https://doi.org/10.1007/s001220100744
         keywords:
            Keywords Sugar beet
            Mitochondria
            nad4
            Intron
            RNA editing
            Caryophyllales
            Plant Breeding/Biotechnology
            Plant Genetics and Genomics
            Agriculture
            Plant Biochemistry
            Biochemistry
            general
            Biotechnology
         image:
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            name:Theoretical and Applied Genetics
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               name:N. Itchoda
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                     name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
                     address:
                        name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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                     address:
                        name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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               name:H. Nagano
               affiliation:
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                     address:
                        name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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                     address:
                        name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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               name:T. Mikami
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                     address:
                        name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      headline:The sugar beet mitochondrial nad4 gene: an intron loss and its phylogenetic implication in the Caryophyllales
      description:The sugar beet mitochondrial gene for subunit IV of NADH dehydrogenase (nad4) has been characterized. Unlike the corresponding genes in wheat and turnip, sugar beet nad4 lacks the second intron (nad4-i2). Northern-blot analysis demonstrates transcription of the gene. A total of 19 RNA editing sites were identified in the sugar beet nad4 transcripts; interestingly, there is no editing in the region which flanks the lost intron. This observation is in favour of intron loss via homologous recombination of an edited RNA intermediate. We also found that the nad4-i2 intron is absent from the mitochondrial genomes of all examined members of the Caryophyllales, but present in the closely related orders, Polygonales and Plumbaginales, which suggests that the intron was lost in the common ancestor of the Caryophyllales.
      datePublished:
      dateModified:
      pageStart:209
      pageEnd:213
      sameAs:https://doi.org/10.1007/s001220100744
      keywords:
         Keywords Sugar beet
         Mitochondria
         nad4
         Intron
         RNA editing
         Caryophyllales
         Plant Breeding/Biotechnology
         Plant Genetics and Genomics
         Agriculture
         Plant Biochemistry
         Biochemistry
         general
         Biotechnology
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            name:N. Itchoda
            affiliation:
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                  address:
                     name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
                     type:PostalAddress
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            name:S. Nishizawa
            affiliation:
                  name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
                  address:
                     name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
                     type:PostalAddress
                  type:Organization
            type:Person
            name:H. Nagano
            affiliation:
                  name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
                  address:
                     name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
                     type:PostalAddress
                  type:Organization
            type:Person
            name:T. Kubo
            affiliation:
                  name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
                  address:
                     name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
                     type:PostalAddress
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            name:T. Mikami
            affiliation:
                  name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
                  address:
                     name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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         name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      address:
         name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      address:
         name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      address:
         name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      address:
         name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      affiliation:
            name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
            address:
               name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      affiliation:
            name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
            address:
               name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      name:H. Nagano
      affiliation:
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            address:
               name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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      name:T. Kubo
      affiliation:
            name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
            address:
               name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
               type:PostalAddress
            type:Organization
      name:T. Mikami
      affiliation:
            name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
            address:
               name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
               type:PostalAddress
            type:Organization
PostalAddress:
      name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
      name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
      name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
      name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
      name:Laboratory of Genetic Engineering, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan e-mail: [email protected] Fax: +81-11-716-0879, Present addresses: N. Itchoda, Hokkaido Green-Bio Institute, Naganuma, Hokkaido, 069-1301, Japan, S. Nishizawa, Genetic ID, Yokohama, 224-0032, Japan, H. Nagano, Plant Breeding Institute, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan, , JP
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