KLAUSVIGO . GITHUB . IO {
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Title:
Visualization of Phylogenetic Networks • tanggle
Description:
Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. ggtree and using functions from ape and phangorn. It extends the ggtree package [@Yu2017] to allow the visualization of phylogenetic networks using the ggplot2 syntax. It offers an alternative to the plot functions already available in ape Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and phangorn Schliep (2011) <doi:10.1093/bioinformatics/btq706>.
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12 years and 3 months (reg. 2013-03-08).
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Keywords {🔍}
author, tanggle, schliep, phylogenetic, phangorn, install, networks, class, ape, ggtree, package, code, bioinformatics, trees, methods, klaus, marta, vidalgarcia, claudia, solislemus, leann, biancani, eren, ada, francisco, henao, diaz, reference, articles, function, plot, evonet, split, graphs, networx, remotesinstallgithubklausvigotanggle, bioconductor, requirenamespacebiocmanager, quietly, true, installpackagesbiocmanager, biocmanagerinstallggtree, ggplot, unsure, installed, packages, quickly, run, packagesneeded, cggplot,
Topics {✒️}
marta vidal-garcia claudia solis-lemus /klausvigo/tanggle/issues license artistic-2 leann biancani eren ada tommy tsan-yuk lam francisco henao diaz /klausvigo/tanggle/ report intertwining phylogenetic trees methods ecol evol plot phylogenetic networks klausvigo/tanggle phylogenetic trees klaus schliep phylogenetic analysis install tanggle class evonet split graphs class networx quietly = true quickly run modern phylogenetics evolutionary analyses guangchuang yu david smith huachen zhu yi guan site built install remotes install ggplot tanggle 0 tanggle ggtree package code networks methods schliep schliep 592-593 schliep install ggtree packages_needed % package packages_to_install function ape phangorn install_github bioconductor requirenamespace
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