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Title:
Speedup expected_errors by using a lookup table by rhpvorderman · Pull Request #700 · marcelm/cutadapt · GitHub
Description:
Also includes a check if every phred score is in fact a valid phred score. By assigning the phreds to a uint8_t array, the quals[i] - base calculation is unsigned, and thus the result will always b...
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Keywords {🔍}
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Topics {✒️}
speedup expected errors pull request expensive exponent calculations issues valid phred score fasterexpectederrors branch conversation lookup table marcelm phred score rhpvorderman lookup time phred lower uint8_t array invalid character fit easily l1-cache ~3-4 clock cycles explicitly typing comment reviewers reviews assignees assigned labels personal information main milestone github sign skip jump includes check fact assigning phreds quals[ unsigned result positive map higher faster floats hard beat arithmetic f15bcc3 nice appreciated free join
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- As a result we can check all phreds with only one check: are they higher than 93?
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