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Keywords {🔍}

marcelm, anchoring, file, issue, sign, cutadapt, end, filespacersfasta, adapters, navigation, open, pull, requests, actions, security, closed, ive, syntax, commented, owner, add, ill, added, notation, github, labels, projects, milestone, footer, skip, content, menu, product, solutions, resources, source, enterprise, pricing, search, jump, public, notifications, fork, star, code, issues, insights, description, ryandward, opened,

Topics {✒️}

issue open personal information anchoring marcelm closed comment metadata assignees 5'-end works fine installed cutadapt cutadapt -j12 implemented anchoring anchoring 3’ adapters cutadapt 4 working pretty assigned labels labels projects projects milestone milestone relationships anchoring anchor 3' adapters github ecd7ded sign input fasta add 5' adapters 3' end 3'-end added sign file ^file file'$' file$ fasta fasta fasta$ fasta'$' skip jump conda intended figure syntax indels promoters tons incarnations placing errors spacers ideas couldn decide

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• Anchoring a file to the 3' end using -a?
• Got any ideas?

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DiscussionForumPosting:
      context:https://schema.org
      headline:Anchoring a file to the 3' end using -a?
      articleBody:Hey, I've installed cutadapt using conda, and it's working pretty much as intended, except I can't seem to figure out the syntax for anchoring something on the 3'-end. Anchoring to the 5'-end works fine: `cutadapt -j12 -e 0 --no-indels -g ^file:promoters.fasta...` But, I've tried tons of incarnations of placing the `$`, and I just get errors. ` -a file'$':spacers.fasta` ` -a file$:spacers.fasta` ` -a file:spacers.fasta$` ` -a file:spacers.fasta'$'` Got any ideas?
      author:
         url:https://github.com/ryandward
         type:Person
         name:ryandward
      datePublished:2023-02-12T20:50:46.000Z
      interactionStatistic:
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      url:https://github.com/674/cutadapt/issues/674
      context:https://schema.org
      headline:Anchoring a file to the 3' end using -a?
      articleBody:Hey, I've installed cutadapt using conda, and it's working pretty much as intended, except I can't seem to figure out the syntax for anchoring something on the 3'-end. Anchoring to the 5'-end works fine: `cutadapt -j12 -e 0 --no-indels -g ^file:promoters.fasta...` But, I've tried tons of incarnations of placing the `$`, and I just get errors. ` -a file'$':spacers.fasta` ` -a file$:spacers.fasta` ` -a file:spacers.fasta$` ` -a file:spacers.fasta'$'` Got any ideas?
      author:
         url:https://github.com/ryandward
         type:Person
         name:ryandward
      datePublished:2023-02-12T20:50:46.000Z
      interactionStatistic:
         type:InteractionCounter
         interactionType:https://schema.org/CommentAction
         userInteractionCount:2
      url:https://github.com/674/cutadapt/issues/674
Person:
      url:https://github.com/ryandward
      name:ryandward
      url:https://github.com/ryandward
      name:ryandward
InteractionCounter:
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      interactionType:https://schema.org/CommentAction
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