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Keywords {🔍}

read, total, adapter, error, cutadapt, time, nextseqtrim, statistics, qualitytrimmed, written, filtered, marcelm, issue, basepairs, processed, counts, outafqgz, errors, trimed, readsrfqgz, forestcat, runs, reply, sign, incorrect, closed, commented, test, sequential, testrunb, outbfqgz, numbers, report, trimmed, unexpected, anchored, correct, testrun, noindels, agatcggaagagcacacgtctgaactccagtca, agatcggaagagcgtcgtgtagggaaagagtgt, run, comment, problem, fixed, navigation, pull, requests, actions, security,

Topics {✒️}

test-run-1b test-run-3b total basepairs processed sequential cutadapt runs personal information statistics pair-end data marcelm closed cutadapt --nextseq-trim=20 unexpected error counts reported error counts comment metadata assignees incorrect statistics appeared 840 bp quality-trimmed 250 bp quality-trimmed 137 bp quality-trimmed 396 bp quality-trimmed indels --nextseq-trim=10 test-run-2 test run closed issue forestcat1 edits correct statistics f908cbd sign test runs total written quality-trimmed sequential runs 5'- error counts total number nextseq-trim 0 --nextseq-trim=20 nextseq-trim=20 5' trimmed time 0-error 5'- adapter 1-error 3'- adapter 2-error 3'- adapter 3-error 3'- adapter open report refer cutadapt cutadapt 3 cutadapt 5'- anchored adapter vice versa anchored 5'- adapter trimed time removed sequences spent time chlige added assigned labels

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• Trimed time of 3-error 3'- adapter, respectively?

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DiscussionForumPosting:
      context:https://schema.org
      headline:Statistics are incorrect when --nextseq-trim is combined with -q
      articleBody: `cutadapt -q 15,0`: ``` Total basepairs processed: 218,527,840 bp Quality-trimmed: 7,116,934 bp (3.3%) Total written (filtered): 211,410,906 bp (96.7%) ``` `cutadapt --nextseq-trim=20`: ``` Total basepairs processed: 218,527,840 bp Quality-trimmed: 18,457,253 bp (8.4%) Total written (filtered): 200,070,587 bp (91.6%) ``` `cutadapt -q 15,0 --nextseq-trim=20`: ``` Total basepairs processed: 218,527,840 bp Quality-trimmed: 2,155 bp (0.0%) Total written (filtered): 200,068,432 bp (91.6%) ``` See #615
      author:
         url:https://github.com/marcelm
         type:Person
         name:marcelm
      datePublished:2022-04-19T09:47:52.000Z
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      url:https://github.com/616/cutadapt/issues/616
      context:https://schema.org
      headline:Statistics are incorrect when --nextseq-trim is combined with -q
      articleBody: `cutadapt -q 15,0`: ``` Total basepairs processed: 218,527,840 bp Quality-trimmed: 7,116,934 bp (3.3%) Total written (filtered): 211,410,906 bp (96.7%) ``` `cutadapt --nextseq-trim=20`: ``` Total basepairs processed: 218,527,840 bp Quality-trimmed: 18,457,253 bp (8.4%) Total written (filtered): 200,070,587 bp (91.6%) ``` `cutadapt -q 15,0 --nextseq-trim=20`: ``` Total basepairs processed: 218,527,840 bp Quality-trimmed: 2,155 bp (0.0%) Total written (filtered): 200,068,432 bp (91.6%) ``` See #615
      author:
         url:https://github.com/marcelm
         type:Person
         name:marcelm
      datePublished:2022-04-19T09:47:52.000Z
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      url:https://github.com/616/cutadapt/issues/616
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      name:marcelm
      url:https://github.com/marcelm
      name:marcelm
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