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Title:
Penalize indels more Β· Issue #604 Β· marcelm/cutadapt
Description:
Indels are enabled by default, but cost the same as mismatches. This often leads to unexpected results, typically longer sequences being trimmed than expected, see #597. We could penalize indels more, but should also re-consider whether ...
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Keywords {π}
indels, penalize, marcelm, issue, mismatches, sign, navigation, cutadapt, pull, requests, actions, security, closed, added, mentioned, github, labels, projects, milestone, footer, skip, content, menu, product, solutions, resources, open, source, enterprise, pricing, search, jump, public, notifications, fork, star, code, issues, insights, description, opened, enabled, default, cost, leads, unexpected, results, typically, longer, sequences,
Topics {βοΈ}
98e540c marcelm closed activity marcelm added cd65032 marcelm mentioned penalize indels typically longer sequences comment metadata assignees evaluate cutadapt 4 unexpected results assigned labels labels projects projects milestone milestone relationships github sign mismatches skip jump enabled default cost leads trimmed expected optimizing number matches thing commit references reference free join conversation account development branches share
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DiscussionForumPosting:
context:https://schema.org
headline:Penalize indels more
articleBody:Indels are enabled by default, but cost the same as mismatches. This often leads to unexpected results, typically longer sequences being trimmed than expected, see #597.
We could penalize indels more, but should also re-consider whether optimizing the number of matches is the best thing to do.
author:
url:https://github.com/marcelm
type:Person
name:marcelm
datePublished:2022-03-04T16:49:50.000Z
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headline:Penalize indels more
articleBody:Indels are enabled by default, but cost the same as mismatches. This often leads to unexpected results, typically longer sequences being trimmed than expected, see #597.
We could penalize indels more, but should also re-consider whether optimizing the number of matches is the best thing to do.
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datePublished:2022-03-04T16:49:50.000Z
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