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}
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Title:
--errors needs to take into account N wildcards Β· Issue #603 Β· marcelm/cutadapt
Description:
When -e X is specified, Cutadapt deduces the implied error rate from the full length of the adapter sequence, but it should only use the non-N part. For example, -e 2 -a N{4}ACGT currently allows only one error for a full-length match.
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Keywords {π}
marcelm, sign, account, wildcards, issue, errors, error, navigation, cutadapt, pull, requests, actions, security, closed, rate, mentioned, github, labels, projects, milestone, footer, skip, content, menu, product, solutions, resources, open, source, enterprise, pricing, search, jump, public, notifications, fork, star, code, issues, insights, description, opened, deduces, implied, full, length, adapter, sequence, nonn, part,
Topics {βοΈ}
activity marcelm mentioned personal information --errors comment metadata assignees cutadapt deduces full-length match implied error rate errors full length error rate 12936dd sign adapter sequence issue absolute number assigned labels labels projects projects milestone milestone relationships account wildcards github error sign account skip jump part {4}acgt trimming commit references free join conversation development branches share
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DiscussionForumPosting:
context:https://schema.org
headline:--errors needs to take into account N wildcards
articleBody:When `-e X` is specified, Cutadapt deduces the implied error rate from the full length of the adapter sequence, but it should only use the non-N part.
For example, `-e 2 -a N{4}ACGT` currently allows only one error for a full-length match.
author:
url:https://github.com/marcelm
type:Person
name:marcelm
datePublished:2022-03-04T16:46:29.000Z
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url:https://github.com/603/cutadapt/issues/603
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headline:--errors needs to take into account N wildcards
articleBody:When `-e X` is specified, Cutadapt deduces the implied error rate from the full length of the adapter sequence, but it should only use the non-N part.
For example, `-e 2 -a N{4}ACGT` currently allows only one error for a full-length match.
author:
url:https://github.com/marcelm
type:Person
name:marcelm
datePublished:2022-03-04T16:46:29.000Z
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url:https://github.com/603/cutadapt/issues/603
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