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users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\utils users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\report users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\filters users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\__main__ users\mine\appdata\local\programs\python\python37\lib\site-packages users\mine\appdata\local\programs\python\python37\lib\runpy users\mine\appdata\local\programs\python\python37\scripts\cutadapt installing collected packages report import full_report installed python personal information problem activity marcelm mentioned pip install cutadapt==2 filters import running dada2 pipeline collecting cutadapt requirement marcelm closed comment metadata assignees marcelm mentioned install cutadapt code exe\__main__ requires cutadapt typing cutadapt test cutadapt run cutadapt problem __main__ resource module cutadapt cutadapt 2 follow dada2' issue _run_code exec general info ve fixed assigned labels labels projects projects milestone milestone relationships minimal_report file recent call github windows pip pipeline requirement module file call

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DiscussionForumPosting:
      context:https://schema.org
      headline:problem with configuring cutadapt
      articleBody:Hi, A little new to this. Have been trying to follow DADA2's ITS pipeline which requires cutadapt. Have installed python (v3.7.4), and used pip to install cutadapt (v2.5): `pip install cutadapt` received the following: ``` Collecting cutadapt Requirement already satisfied: xopen~=0.8.1 in c:\users\mine\appdata\local\programs\python\python37\lib\site-packages (from cutadapt) (0.8.2) Requirement already satisfied: dnaio~=0.3.0 in c:\users\mine\appdata\local\programs\python\python37\lib\site-packages (from cutadapt) (0.3) Installing collected packages: cutadapt Successfully installed cutadapt-2.5 ``` However, when typing `cutadapt` on the cmd, getting this massage: `Traceback (most recent call last): File "c:\users\mine\appdata\local\programs\python\python37\lib\runpy.py", line 193, in _run_module_as_main "__main__", mod_spec) File "c:\users\mine\appdata\local\programs\python\python37\lib\runpy.py", line 85, in _run_code exec(code, run_globals) File "C:\Users\mine\AppData\Local\Programs\Python\Python37\Scripts\cutadapt.exe\__main__.py", line 5, in <module> File "c:\users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\__main__.py", line 71, in <module> from cutadapt.report import full_report, minimal_report File "c:\users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\report.py", line 10, in <module> from .filters import (NoFilter, PairedNoFilter, TooShortReadFilter, TooLongReadFilter, File "c:\users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\filters.py", line 21, in <module> from .utils import raise_open_files_limit File "c:\users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\utils.py", line 4, in <module> import resource ModuleNotFoundError: No module named 'resource'` Expected to get a list of arguments, general info, etc. And when running [DADA2 pipeline](https://benjjneb.github.io/dada2/ITS_workflow.html) R cannot call on cutadapt and no output is produced. Thanks so much for your help
      author:
         url:https://github.com/gdaniella
         type:Person
         name:gdaniella
      datePublished:2019-09-25T13:31:05.000Z
      interactionStatistic:
         type:InteractionCounter
         interactionType:https://schema.org/CommentAction
         userInteractionCount:3
      url:https://github.com/404/cutadapt/issues/404
      context:https://schema.org
      headline:problem with configuring cutadapt
      articleBody:Hi, A little new to this. Have been trying to follow DADA2's ITS pipeline which requires cutadapt. Have installed python (v3.7.4), and used pip to install cutadapt (v2.5): `pip install cutadapt` received the following: ``` Collecting cutadapt Requirement already satisfied: xopen~=0.8.1 in c:\users\mine\appdata\local\programs\python\python37\lib\site-packages (from cutadapt) (0.8.2) Requirement already satisfied: dnaio~=0.3.0 in c:\users\mine\appdata\local\programs\python\python37\lib\site-packages (from cutadapt) (0.3) Installing collected packages: cutadapt Successfully installed cutadapt-2.5 ``` However, when typing `cutadapt` on the cmd, getting this massage: `Traceback (most recent call last): File "c:\users\mine\appdata\local\programs\python\python37\lib\runpy.py", line 193, in _run_module_as_main "__main__", mod_spec) File "c:\users\mine\appdata\local\programs\python\python37\lib\runpy.py", line 85, in _run_code exec(code, run_globals) File "C:\Users\mine\AppData\Local\Programs\Python\Python37\Scripts\cutadapt.exe\__main__.py", line 5, in <module> File "c:\users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\__main__.py", line 71, in <module> from cutadapt.report import full_report, minimal_report File "c:\users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\report.py", line 10, in <module> from .filters import (NoFilter, PairedNoFilter, TooShortReadFilter, TooLongReadFilter, File "c:\users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\filters.py", line 21, in <module> from .utils import raise_open_files_limit File "c:\users\mine\appdata\local\programs\python\python37\lib\site-packages\cutadapt\utils.py", line 4, in <module> import resource ModuleNotFoundError: No module named 'resource'` Expected to get a list of arguments, general info, etc. And when running [DADA2 pipeline](https://benjjneb.github.io/dada2/ITS_workflow.html) R cannot call on cutadapt and no output is produced. Thanks so much for your help
      author:
         url:https://github.com/gdaniella
         type:Person
         name:gdaniella
      datePublished:2019-09-25T13:31:05.000Z
      interactionStatistic:
         type:InteractionCounter
         interactionType:https://schema.org/CommentAction
         userInteractionCount:3
      url:https://github.com/404/cutadapt/issues/404
Person:
      url:https://github.com/gdaniella
      name:gdaniella
      url:https://github.com/gdaniella
      name:gdaniella
InteractionCounter:
      interactionType:https://schema.org/CommentAction
      userInteractionCount:3
      interactionType:https://schema.org/CommentAction
      userInteractionCount:3

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