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Keywords {🔍}

marcelm, cutadapt, issue, line, file, call, susanafreitas, infofile, commented, sign, typeerror, takes, positional, arguments, readtrimmedfastqgz, ahtlybbxxlanesindexcaccttaccttcgcctslrfastqgz, error, python, version, owner, fixed, option, navigation, pull, requests, actions, security, closed, run, command, options, gatcggaagagcacacgtctgaactccagtcac, atctcgtatgccgtcttctgcttg, aatgatacggcgaccaccgagatctacac, acactctttccctacacgacgctcttccgatct, discardtrimmed, readtxt, author, processing, pairedend, mntsoftwarelocaleasybuildsoftwarelangpythonlibpythonsitepackagescutadaptpipelinepy, totalbp, matches, problem, test, crash, data, development, github, labels,

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gz ah3tlybbxx_lane4-s324-index--caccttac-cttcgcct-84-505_s324_l004_r1_001 gz ah3tlybbxx_lane4-s324-index--caccttac-cttcgcct-84-505_s324_l004_r2_001 local/easybuild/software/lang/python/3 7/site-packages/cutadapt/pipeline 7/site-packages/cutadapt/main processing paired-end data paired-info-file option gz processing reads paired-end mode info-file option comment metadata assignees full error message marcelm added options --wildcard-file info-file info file /mnt/software/ python versions typeerror cutadapt version 2 2/bin/cutadapt read1-trimmed1 gz run cutadapt rest-file university server module system 2/lib/python3 assigned labels labels projects projects milestone milestone relationships read2-trimmed2 ve fixed fixed version development version github 4 python 3 python 3 recent call issue cutadapt cutadapt cutadapt 2 read1 main data file command options

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DiscussionForumPosting:
      context:https://schema.org
      headline:TypeError _call_() takes 3 positional arguments but 5 were given
      articleBody:Dear all I am trying to run cutadapt with the command below but I keep getting the same error: TypeErrror: __call__() takes 3 positional arguments but 5 were given. The cutadapt and python versions are: cutadapt version 2.4 python 3.7.2 I am using cutadapt on the university server and it was installed by the IT team (we upload it via module system). I found this issue here: https://github.com/marcelm/cutadapt/issues/203 so I tried to remove all possible options, but I always get the same error. Do you think you could help?? Thanks!!! _cutadapt -b GATCGGAAGAGCACACGTCTGAACTCCAGTCAC -b ATCTCGTATGCCGTCTTCTGCTTG -B AATGATACGGCGACCACCGAGATCTACAC -B ACACTCTTTCCCTACACGACGCTCTTCCGATCT -e 0.2 -n 3 --discard-trimmed --info-file read1.txt -q 20 -m 40 -o read1-trimmed1.fastq.gz -p read2-trimmed2.fastq.gz AH3TLYBBXX_lane4-s324-index--CACCTTAC-CTTCGCCT-84-505_S324_L004_R1_001.fastq.gz AH3TLYBBXX_lane4-s324-index--CACCTTAC-CTTCGCCT-84-505_S324_L004_R2_001.fastq.gz_
      author:
         url:https://github.com/SusanaFreitas
         type:Person
         name:SusanaFreitas
      datePublished:2019-08-08T15:54:32.000Z
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      url:https://github.com/393/cutadapt/issues/393
      context:https://schema.org
      headline:TypeError _call_() takes 3 positional arguments but 5 were given
      articleBody:Dear all I am trying to run cutadapt with the command below but I keep getting the same error: TypeErrror: __call__() takes 3 positional arguments but 5 were given. The cutadapt and python versions are: cutadapt version 2.4 python 3.7.2 I am using cutadapt on the university server and it was installed by the IT team (we upload it via module system). I found this issue here: https://github.com/marcelm/cutadapt/issues/203 so I tried to remove all possible options, but I always get the same error. Do you think you could help?? Thanks!!! _cutadapt -b GATCGGAAGAGCACACGTCTGAACTCCAGTCAC -b ATCTCGTATGCCGTCTTCTGCTTG -B AATGATACGGCGACCACCGAGATCTACAC -B ACACTCTTTCCCTACACGACGCTCTTCCGATCT -e 0.2 -n 3 --discard-trimmed --info-file read1.txt -q 20 -m 40 -o read1-trimmed1.fastq.gz -p read2-trimmed2.fastq.gz AH3TLYBBXX_lane4-s324-index--CACCTTAC-CTTCGCCT-84-505_S324_L004_R1_001.fastq.gz AH3TLYBBXX_lane4-s324-index--CACCTTAC-CTTCGCCT-84-505_S324_L004_R2_001.fastq.gz_
      author:
         url:https://github.com/SusanaFreitas
         type:Person
         name:SusanaFreitas
      datePublished:2019-08-08T15:54:32.000Z
      interactionStatistic:
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         userInteractionCount:5
      url:https://github.com/393/cutadapt/issues/393
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      url:https://github.com/SusanaFreitas
      name:SusanaFreitas
      url:https://github.com/SusanaFreitas
      name:SusanaFreitas
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      interactionType:https://schema.org/CommentAction
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      interactionType:https://schema.org/CommentAction
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