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Title:
Allow anchoring all sequences given with "file:" Β· Issue #361 Β· marcelm/cutadapt
Description:
I would like to be able to write -g ^file:adapters.fasta instead of prefixing all the sequences in adapters.fasta with a ^.
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Keywords {π}
marcelm, fileadaptersfa, file, commented, awgymer, xfileadaptersfa, adapter, issue, owner, author, sequence, fasta, sign, anchoring, sequences, character, filexadaptersfa, fileadaptersfax, adapters, mentioned, end, syntax, place, navigation, search, pull, requests, actions, security, closed, fileadaptersfasta, restriction, parentheses, option, edited, edits, case, half, side, trimmed, actagacatgatadapteragatgatagat, returns, time, account, sep, pars, works, efa, github, labels,
Topics {βοΈ}
internal/partial adapter/primer sequences internal adapters search separate placement restriction comment metadata assignees marcelm closed adapter-specific parameters command-line option left-hand side adapter fasta filenames place restriction character marcelm mentioned ef1a172 sign awgymer edits hand side pars = spec[5 special character found adapter adapter sequence recently realised subtle difference match midway sequence returning sequence preceding actagacatgatadapteragatgatagat returns recall correctly makes sense semi-colon assigned labels labels projects projects milestone milestone relationships personal information fa xfile fa filex fa$ xfile parentheses optional similar case external file github issue syntax wouldn fa file$ fa file seq = record fasta sep place character adapter 3β adapter
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Questions {β}
- Already have an account?
- Anchoring a file to the 3' end using -a?
- Edit: Is this actually just the same as using -b?
- How can we map this to the file: syntax?
Schema {πΊοΈ}
DiscussionForumPosting:
context:https://schema.org
headline:Allow anchoring all sequences given with "file:"
articleBody:I would like to be able to write `-g ^file:adapters.fasta` instead of prefixing all the sequences in `adapters.fasta` with a `^`.
author:
url:https://github.com/marcelm
type:Person
name:marcelm
datePublished:2019-02-28T15:28:39.000Z
interactionStatistic:
type:InteractionCounter
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userInteractionCount:8
url:https://github.com/361/cutadapt/issues/361
context:https://schema.org
headline:Allow anchoring all sequences given with "file:"
articleBody:I would like to be able to write `-g ^file:adapters.fasta` instead of prefixing all the sequences in `adapters.fasta` with a `^`.
author:
url:https://github.com/marcelm
type:Person
name:marcelm
datePublished:2019-02-28T15:28:39.000Z
interactionStatistic:
type:InteractionCounter
interactionType:https://schema.org/CommentAction
userInteractionCount:8
url:https://github.com/361/cutadapt/issues/361
Person:
url:https://github.com/marcelm
name:marcelm
url:https://github.com/marcelm
name:marcelm
InteractionCounter:
interactionType:https://schema.org/CommentAction
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interactionType:https://schema.org/CommentAction
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