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Title:
Allow specifying an absolute number of errors Β· Issue #358 Β· marcelm/cutadapt
Description:
The -e option currently allows only fractional values between 0 and 1, intepreted as the maximum error rate, computed relative to the length of the matching portion of the adapter. For anchored adapters, the matching portion of the adapt...
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marcelm, number, sign, errors, issue, absolute, error, rate, adapter, navigation, pull, requests, actions, security, closed, length, matching, portion, adapters, added, featurerequest, abfa, github, projects, milestone, footer, skip, content, menu, product, solutions, resources, open, source, enterprise, pricing, search, jump, cutadapt, public, notifications, fork, star, code, issues, insights, description, opened, option, fractional,
Topics {βοΈ}
5a5bfa9 marcelm closed comment metadata assignees maximum error rate completedin 5a5bfa9 sign projects milestone error rate fractional values computed relative matching portion anchored adapters allowed differences anchored adapters repeated bases issue milestone relationships personal information absolute number github adapter sequence errors number sign adapter skip jump option intepreted length convenient made work converted don match commit references free join conversation account development branches share
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DiscussionForumPosting:
context:https://schema.org
headline:Allow specifying an absolute number of errors
articleBody:The `-e` option currently allows only fractional values between 0 and 1, intepreted as the maximum error rate, computed relative to the length of the matching portion of the adapter. For anchored adapters, the matching portion of the adapter is always the same and it would be more convenient to be able to specify the absolute number of allowed differences.
Even for non-anchored adapters, this should be made to work, but the number should be converted to an error rate since we donβt want to allow, for example, three errors for a match that has a length of only three.
author:
url:https://github.com/marcelm
type:Person
name:marcelm
datePublished:2019-02-23T10:05:59.000Z
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url:https://github.com/358/cutadapt/issues/358
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headline:Allow specifying an absolute number of errors
articleBody:The `-e` option currently allows only fractional values between 0 and 1, intepreted as the maximum error rate, computed relative to the length of the matching portion of the adapter. For anchored adapters, the matching portion of the adapter is always the same and it would be more convenient to be able to specify the absolute number of allowed differences.
Even for non-anchored adapters, this should be made to work, but the number should be converted to an error rate since we donβt want to allow, for example, three errors for a match that has a length of only three.
author:
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url:https://github.com/358/cutadapt/issues/358
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