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Title:
"Reads written" counts both trimmed and untrimmed reads Β· Issue #128 Β· marcelm/cutadapt
Description:
In the summary stats, the "Reads written (passing filters)" figure includes both trimmed and untrimmed reads. This can be confusing if trimmed and untrimmed reads are written to different output files since then the number is the sum of ...
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reads, written, marcelm, read, total, issue, adapter, untrimmed, processed, cutadapt, passing, filters, output, trimming, pairs, sign, trimmed, summary, commented, aslrfastqgz, basepairs, files, problem, pairedend, singleend, python, command, line, parameters, discarduntrimmed, errors, mode, finished, usread, readsminute, adapters, filtered, owner, author, navigation, pull, requests, actions, security, counts, closed, opened, figure, mentioned, akshayparopkari,
Topics {βοΈ}
single-end trimming approach paired-end trimming approach fastq --discard-untrimmed a01_s1_l001_r1_001 fastq --discard-untrimmed a01_s1_l001_r2_001 activity marcelm mentioned single-end mode total basepairs processed paired-end mode comment metadata assignees marcelm closed paired-end reads untrimmed reads included trim adapter sequences summary stats gz a01_s1_l001_r2_001 untrimmed-output pairs written untrimmed reads paired correctly read pairs output file reads written οΏ½reads written written reads erroneously written reads/minute output files passing filters error similar p1_r1_v1-v3 p1_r2_v1-v3 option checks properly describes longer include assigned labels labels projects projects milestone milestone relationships personal information cutadapt cutadapt 1 figure includes github issue c1d9dc5 sign problem output fix basepairs written
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DiscussionForumPosting:
context:https://schema.org
headline:"Reads written" counts both trimmed and untrimmed reads
articleBody:In the summary stats, the "Reads written (passing filters)" figure includes both trimmed and untrimmed reads. This can be confusing if trimmed and untrimmed reads are written to different output files since then the number is the sum of both. See also issue #126.
author:
url:https://github.com/marcelm
type:Person
name:marcelm
datePublished:2015-05-28T15:04:40.000Z
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headline:"Reads written" counts both trimmed and untrimmed reads
articleBody:In the summary stats, the "Reads written (passing filters)" figure includes both trimmed and untrimmed reads. This can be confusing if trimmed and untrimmed reads are written to different output files since then the number is the sum of both. See also issue #126.
author:
url:https://github.com/marcelm
type:Person
name:marcelm
datePublished:2015-05-28T15:04:40.000Z
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url:https://github.com/128/cutadapt/issues/128
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