
DOI . ORG {
}
Title[redir]:
Full article: Identification of LIN28B-bound mRNAs reveals features of target recognition and regulation
Description:
Post-transcriptional gene regulation is elicited through a complex network of RNA-binding proteins (RBPs) and miRNA-containing ribonucleoprotein complexes that target defined sequence elements with...
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Keywords {π}
open, linb, science, pmid, windowgoogle, scholar, cell, windowpubmed, windowweb, protein, lin, binding, sites, fig, parclip, cells, target, rna, sequence, csd, zkd, clusters, proteins, targets, motif, lina, genes, mrna, transcripts, experiments, human, observed, acids, expression, analysis, regulation, crosslinking, studies, rnabinding, mrnas, gene, bound, domain, knockdown, data, stem, amino, top, molecular, cycle,
Topics {βοΈ}
/flag/ha-dest destination vectorcitation7 matrix-assisted laser desorption/ionization flag/ha-tagged lin28b protein lin28-mediated post-transcriptional regulation expressing flag/ha-lin28b flag/ha-lin28b expressing full-length ido-par-clips social care medicine cold-shock protein cspb medical systems biology post-transcriptional events inducible flag/ha-lin28b post-transcriptional gene regulation recombinant flag/ha-lin28b lin28b par-clip-binding sites csd ido-par-clip data c-terminally tagged lin28b insulin-pi3k-mtor pathway single cold-shock domain inducible lin28b-expressing cells genome-wide studies reveal elute full-length lin28b semi-dry blotting apparatus lc/ms sample pretreatment οΏ½medium-heavyβ-labeled silac medium dna-mod zoops-minsites 20 par-clip data sets develop ido-par-clip developed ido-par-clip full-length lin28b protein c-terminally truncated lin28b ido-par-clip data individual domain par-clip full-length lin28b proteins d-mem high glucose counteract false-positive signals additional material acknowledgments anti-flag m2 antibody lin28b par-clip data post-transcriptional regulation g-rich binding motif protein-rna complex migrating neural stem-cell commitment single-stranded dna binding hrp-conjugated secondary antibody ido-par-clip approach n-terminal flag-tag transition-centered binding sites transcriptome-wide view rna-binding protein hur
Questions {β}
- How does Lin28 let-7 control development and disease?
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datePublished:2013-07-01
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articleSection:Research Paper
name:Identification of LIN28B-bound mRNAs reveals features of target recognition and regulation
headline:Identification of LIN28B-bound mRNAs reveals features of target recognition and regulation
abstract:The conserved human LIN28 RNA-binding proteins function in development, maintenance of pluripotency and oncogenesis. We used PAR-CLIP and a newly developed variant of this method, iDo-PAR-CLIP, to identify LIN28B targets as well as sites bound by the individual RNA-binding domains of LIN28B in the human transcriptome at nucleotide resolution. The position of target binding sites reflected the known structural relative orientation of individual LIN28B-binding domains, validating iDo-PAR-CLIP. Our data suggest that LIN28B directly interacts with most expressed mRNAs and members of the let-7 microRNA family. The Lin28-binding motif detected in pre-let-7 was enriched in mRNA sequences bound by LIN28B. Upon LIN28B knockdown, cell proliferation and the cell cycle were strongly impaired. Quantitative shotgun proteomics of LIN28B depleted cells revealed significant reduction of protein synthesis from its RNA targets. Computational analyses provided evidence that the strength of protein synthesis reduction correlated with the location of LIN28B binding sites within target transcripts.
description:The conserved human LIN28 RNA-binding proteins function in development, maintenance of pluripotency and oncogenesis. We used PAR-CLIP and a newly developed variant of this method, iDo-PAR-CLIP, to identify LIN28B targets as well as sites bound by the individual RNA-binding domains of LIN28B in the human transcriptome at nucleotide resolution. The position of target binding sites reflected the known structural relative orientation of individual LIN28B-binding domains, validating iDo-PAR-CLIP. Our data suggest that LIN28B directly interacts with most expressed mRNAs and members of the let-7 microRNA family. The Lin28-binding motif detected in pre-let-7 was enriched in mRNA sequences bound by LIN28B. Upon LIN28B knockdown, cell proliferation and the cell cycle were strongly impaired. Quantitative shotgun proteomics of LIN28B depleted cells revealed significant reduction of protein synthesis from its RNA targets. Computational analyses provided evidence that the strength of protein synthesis reduction correlated with the location of LIN28B binding sites within target transcripts.
author:
type:Person
name:Nikolaus Rajewsky
type:Person
name:Florian Mayr
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type:Person
name:Nikolaus Rajewsky
type:Person
name:Nikolaus Rajewsky
type:Person
name:Nikolaus Rajewsky
type:Person
name:Nikolaus Rajewsky
type:Person
name:Markus Landthaler
keywords:post-transcriptional regulation, RNA-binding protein, CLIP, stem cell
pageStart:1146
pageEnd:1159
datePublished:2013-05-29
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Analytics and Tracking {π}
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