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We began analyzing https://www.nature.com/articles/srep08057, but it redirected us to https://www.nature.com/articles/srep08057. The analysis below is for the second page.

Title[redir]:
Correlation of circular RNA abundance with proliferation โ€“ exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis and normal human tissues | Scientific Reports
Description:
Circular RNAs are a recently (re-)discovered abundant RNA species with presumed function as miRNA sponges, thus part of the competing endogenous RNA network. We analysed the expression of circular and linear RNAs and proliferation in matched normal colon mucosa and tumour tissues. We predicted >1,800 circular RNAs and proved the existence of five randomly chosen examples using RT-qPCR. Interestingly, the ratio of circular to linear RNA isoforms was always lower in tumour compared to normal colon samples and even lower in colorectal cancer cell lines. Furthermore, this ratio correlated negatively with the proliferation index. The correlation of global circular RNA abundance (the circRNA index) and proliferation was validated in a non-cancerous proliferative disease, idiopathic pulmonary fibrosis, ovarian cancer cells compared to cultured normal ovarian epithelial cells and 13 normal human tissues. We are the first to report a global reduction of circular RNA abundance in colorectal cancer cell lines and cancer compared to normal tissues and discovered a negative correlation of global circular RNA abundance and proliferation. This negative correlation seems to be a general principle in human tissues as validated with three different settings. Finally, we present a simple model how circular RNAs could accumulate in non-proliferating cells.

Matching Content Categories {๐Ÿ“š}

  • Education
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Content Management System {๐Ÿ“}

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Custom-built

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Traffic Estimate {๐Ÿ“ˆ}

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๐Ÿ™๏ธ Massive Traffic: 50M - 100M visitors per month


Based on our best estimate, this website will receive around 80,473,390 visitors per month in the current month.

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Keywords {๐Ÿ”}

normal, circrnas, tissues, cancer, tumour, circrna, samples, cell, circular, expression, crc, linear, rna, rnas, compared, proliferation, mucosa, article, cells, supplementary, data, lines, reads, colon, backsplice, circ, google, scholar, rnase, correlation, fig, index, rnaseq, cas, human, table, tissue, ratios, colorectal, ovarian, mirnas, analysis, mki, patients, circrnalinrna, gene, nature, expressed, pooled, function,

Topics {โœ’๏ธ}

nature portfolio privacy policy sciencell research laboratories ๏ฟฝm formalin-fixed paraffin-embedded advertising nature 495 nature social media thermo fisher scientific development-specific expression language 0/ reprints nucleotide gu-rich element y-axis log2 scale biological raison d'รชtre fast gapped-read alignment article bachmayr-heyda random back-splice events3 post-hoc nemenyi test rna-seq data sets rna-seq alignment algorithms back-splice aware mapper rna-seq unified mapper overlapping back-splice junctions cancerous neo-proliferative disease access promoting ubiquitin-proteasomal degradation identified back-splice junctions collecting clinical information rna-seq data set high-throughput sequencing data proto-oncogene sv40 large back-splice reads multiplied sponging mir-149-5p obtained back-splice junctions multi-split mapping algorithm induce mirna-mediated degradation back-splice reads divided subsequent qiazol/chloroform extraction htseq-count mode โ€˜union back-splice supporting reads intronic lariat-originated circrnas rrna depleted rna-seq development molecular oncology group permissions full size image r-package samr v2 back-splice reads based cell-type specific features

Schema {๐Ÿ—บ๏ธ}

WebPage:
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         headline:Correlation of circular RNA abundance with proliferation รขย€ย“ exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis and normal human tissues
         description:Circular RNAs are a recently (re-)discovered abundant RNA species with presumed function as miRNA sponges, thus part of the competing endogenous RNA network. We analysed the expression of circular and linear RNAs and proliferation in matched normal colon mucosa and tumour tissues. We predicted >1,800 circular RNAs and proved the existence of five randomly chosen examples using RT-qPCR. Interestingly, the ratio of circular to linear RNA isoforms was always lower in tumour compared to normal colon samples and even lower in colorectal cancer cell lines. Furthermore, this ratio correlated negatively with the proliferation index. The correlation of global circular RNA abundance (the circRNA index) and proliferation was validated in a non-cancerous proliferative disease, idiopathic pulmonary fibrosis, ovarian cancer cells compared to cultured normal ovarian epithelial cells and 13 normal human tissues. We are the first to report a global reduction of circular RNA abundance in colorectal cancer cell lines and cancer compared to normal tissues and discovered a negative correlation of global circular RNA abundance and proliferation. This negative correlation seems to be a general principle in human tissues as validated with three different settings. Finally, we present a simple model how circular RNAs could accumulate in non-proliferating cells.
         datePublished:2015-01-27T00:00:00Z
         dateModified:2015-01-27T00:00:00Z
         pageStart:1
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         license:http://creativecommons.org/licenses/by-nc-nd/4.0/
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            Epigenetics
            Science
            Humanities and Social Sciences
            multidisciplinary
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      headline:Correlation of circular RNA abundance with proliferation รขย€ย“ exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis and normal human tissues
      description:Circular RNAs are a recently (re-)discovered abundant RNA species with presumed function as miRNA sponges, thus part of the competing endogenous RNA network. We analysed the expression of circular and linear RNAs and proliferation in matched normal colon mucosa and tumour tissues. We predicted >1,800 circular RNAs and proved the existence of five randomly chosen examples using RT-qPCR. Interestingly, the ratio of circular to linear RNA isoforms was always lower in tumour compared to normal colon samples and even lower in colorectal cancer cell lines. Furthermore, this ratio correlated negatively with the proliferation index. The correlation of global circular RNA abundance (the circRNA index) and proliferation was validated in a non-cancerous proliferative disease, idiopathic pulmonary fibrosis, ovarian cancer cells compared to cultured normal ovarian epithelial cells and 13 normal human tissues. We are the first to report a global reduction of circular RNA abundance in colorectal cancer cell lines and cancer compared to normal tissues and discovered a negative correlation of global circular RNA abundance and proliferation. This negative correlation seems to be a general principle in human tissues as validated with three different settings. Finally, we present a simple model how circular RNAs could accumulate in non-proliferating cells.
      datePublished:2015-01-27T00:00:00Z
      dateModified:2015-01-27T00:00:00Z
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      pageEnd:10
      license:http://creativecommons.org/licenses/by-nc-nd/4.0/
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         Epigenetics
         Science
         Humanities and Social Sciences
         multidisciplinary
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      name:Department of Obstetrics and Gynaecology, Molecular Oncology Group, Comprehensive Cancer Centre, Medical University of Vienna & Ludwig Boltzmann Cluster Translational Oncology, Vienna, Austria
      name:Department of Obstetrics and Gynaecology, Molecular Oncology Group, Comprehensive Cancer Centre, Medical University of Vienna & Ludwig Boltzmann Cluster Translational Oncology, Vienna, Austria
      name:Department of Obstetrics and Gynaecology, Molecular Oncology Group, Comprehensive Cancer Centre, Medical University of Vienna & Ludwig Boltzmann Cluster Translational Oncology, Vienna, Austria
      name:Department of Obstetrics and Gynaecology, Molecular Oncology Group, Comprehensive Cancer Centre, Medical University of Vienna & Ludwig Boltzmann Cluster Translational Oncology, Vienna, Austria
      name:Department of Surgery, Medical University of Vienna, Vienna, Austria
      name:Department of Pathology, Medical University of Vienna, Vienna, Austria
      name:Department of Medicine I, Comprehensive Cancer Centre, Medical University of Vienna & Ludwig Boltzmann Cluster Oncology, Vienna, Austria
      name:Department of Obstetrics and Gynaecology, Molecular Oncology Group, Comprehensive Cancer Centre, Medical University of Vienna & Ludwig Boltzmann Cluster Translational Oncology, Vienna, Austria
      name:Department of Obstetrics and Gynaecology, Molecular Oncology Group, Comprehensive Cancer Centre, Medical University of Vienna & Ludwig Boltzmann Cluster Translational Oncology, Vienna, Austria

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