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         headline:Gene expression profiling of breast cell lines identifies potential new basal markers
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      headline:Gene expression profiling of breast cell lines identifies potential new basal markers
      description:A better molecular characterization of breast cell lines (BCL) may help discover new markers to apply to tumour samples. We performed gene and protein expression profiling of 31 BCL using whole-genome DNA microarrays and immunohistochemistry (IHC) on ‘cell microarrays’ (CMA), respectively. Global hierarchical clustering discriminated two groups of BCL: group I corresponded to luminal cell lines, group II to basal and mesenchymal cell lines. Correlations with centroids calculated from a published ‘intrinsic 500-gene set’ assigned 15 cell lines as luminal, eight as basal and four as mesenchymal. A set of 1.233 genes was differentially expressed between basal and luminal samples. Mesenchymal and basal subtypes were rather similar and discriminated by only 227 genes. The expression of 10 proteins (CAV1, CD44, EGFR, MET, ETS1, GATA3, luminal cytokeratin CK19, basal cytokeratin CK5/6, CD10, and ERM protein moesin) encoded by luminal vs basal discriminator genes confirmed the subtype classification and the validity of the identified markers. Our BCL basal/luminal signature correctly re-classified the published series of tumour samples that originally served to identify the molecular subtypes, suggesting that the identified markers should be useful for tumour classification and might represent promising targets for disease management.
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            type:Organization
      name:P Finetti
      affiliation:
            name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes
            address:
               name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
      name:J Adélaïde
      affiliation:
            name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes
            address:
               name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
      name:N Cervera
      affiliation:
            name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes
            address:
               name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
      name:S Fekairi
      affiliation:
            name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes
            address:
               name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
      name:L Xerri
      affiliation:
            name:Institut Paoli-Calmettes
            address:
               name:Department of BioPathology, Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
            name:Université de la Méditerranée, UFR de Médecine
            address:
               name:Université de la Méditerranée, UFR de Médecine, Marseille, France
               type:PostalAddress
            type:Organization
      name:J Jacquemier
      affiliation:
            name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes
            address:
               name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
            name:Institut Paoli-Calmettes
            address:
               name:Department of BioPathology, Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
      name:D Birnbaum
      affiliation:
            name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes
            address:
               name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:F Bertucci
      affiliation:
            name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes
            address:
               name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
            name:Université de la Méditerranée, UFR de Médecine
            address:
               name:Université de la Méditerranée, UFR de Médecine, Marseille, France
               type:PostalAddress
            type:Organization
            name:Marseille Cancer Institute, UMR599 Inserm/Institut Paoli-Calmettes
            address:
               name:Department of Medical Oncology, Marseille Cancer Institute, UMR599 Inserm/Institut Paoli-Calmettes, Marseille, France
               type:PostalAddress
            type:Organization
PostalAddress:
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Department of BioPathology, Institut Paoli-Calmettes, Marseille, France
      name:Université de la Méditerranée, UFR de Médecine, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Department of BioPathology, Institut Paoli-Calmettes, Marseille, France
      name:Université de la Méditerranée, UFR de Médecine, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Department of BioPathology, Institut Paoli-Calmettes, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Marseille Cancer Institute, Laboratory of Molecular Oncology, Inserm/Institut Paoli-Calmettes, Marseille, France
      name:Université de la Méditerranée, UFR de Médecine, Marseille, France
      name:Department of Medical Oncology, Marseille Cancer Institute, UMR599 Inserm/Institut Paoli-Calmettes, Marseille, France
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