DOI . ORG {
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Title[redir]:
Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis | Oncogene
Description:
Head and neck squamous cell carcinoma (HNSCC) is the sixth most common cancer among men in the developed world. There is a need, for both clinical and scientific reasons, to find markers to identify patients with aggressive disease as early as possible, and to understand the events leading to malignant transformation and susceptibility to metastasis. We report the first large-scale gene expression analysis of a unique HNSCC location, the hypopharynx. Four normal and 34 tumour samples were analysed with 12 600 gene microarrays. Clusters of differentially expressed genes were identified in the chromosomal regions 3q27.3, 17q21.2–q21.31, 7q11.22–q22.1 and 11q13.1–q13.3, which, interestingly, have already been identified by comparative genomic hybridization (CGH) as major regions of gene amplification. We showed that six overexpressed genes (EIF4G1, DVL3, EPHB4, MCM7, BRMS1 and SART1) located in these regions are indeed amplified. We report 119 genes that are highly differentially expressed between ‘early’ tumours and normal samples. Of these, we validated by quantitative PCR six novel poorly characterized genes. These genes are potential new markers of HNSCC. Comparing patients with relatively nonaggressive and aggressive tumours (without or with clinical evidence of metastasis 3 years after surgery), we identified 164 differentially expressed genes potentially involved in the acquisition of metastatic potential. This study contributes to the understanding of HNSCC, staging patients into prognostic groups and identifying high-risk patients who may benefit from more aggressive treatment.
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Keywords {🔍}
cancer, nature, genes, access, res, oncogene, article, cell, recherche, analysis, content, hnscc, samples, cookies, information, identification, cromer, millon, head, neck, proc, natl, acad, sci, usa, privacy, carles, muller, abecassis, wasylyk, squamous, carcinoma, open, brown, ligue, contre, correctly, data, journal, potential, frédéric, lemaire, young, patients, aggressive, gene, tumour, oral, botstein, chen,
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nature portfolio permissions reprints privacy policy /~tibs/pam/index advertising nature social media scientific reasons pan-fgfr inhibition depends identifying high-risk patients author correspondence personal data springerlink instant access data protection permissions danièle muller & joseph abecassis bas-rhin/haut-rhin de la technologie contre le cancer hnscc cell models highly differentially expressed differentially expressed genes centre paul strauss de biologie moléculaire privacy van de rijn chromosomal regions 3q27 issue learn unique hnscc location weymuller jr ea explore content subscription content comparative genomic hybridization institutional subscriptions read m5c methylation patterns tumor emt profiles el-naggar ak davies-hill tm o'connell jx d'amico av igbmc core facilities rt-qpcr machine arers verre espoir fp5 project qlk6-2000-00159 cnrs/inserm/ulp emt phenotype associating accepting optional cookies van der kooy genes chromosomes cancer cancer cell
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headline:Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis
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chromosomal location
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Medicine/Public Health
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Cell Biology
Human Genetics
Oncology
Apoptosis
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headline:Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis
description:Head and neck squamous cell carcinoma (HNSCC) is the sixth most common cancer among men in the developed world. There is a need, for both clinical and scientific reasons, to find markers to identify patients with aggressive disease as early as possible, and to understand the events leading to malignant transformation and susceptibility to metastasis. We report the first large-scale gene expression analysis of a unique HNSCC location, the hypopharynx. Four normal and 34 tumour samples were analysed with 12â600 gene microarrays. Clusters of differentially expressed genes were identified in the chromosomal regions 3q27.3, 17q21.2âq21.31, 7q11.22âq22.1 and 11q13.1âq13.3, which, interestingly, have already been identified by comparative genomic hybridization (CGH) as major regions of gene amplification. We showed that six overexpressed genes (EIF4G1, DVL3, EPHB4, MCM7, BRMS1 and SART1) located in these regions are indeed amplified. We report 119 genes that are highly differentially expressed between âearlyâ tumours and normal samples. Of these, we validated by quantitative PCR six novel poorly characterized genes. These genes are potential new markers of HNSCC. Comparing patients with relatively nonaggressive and aggressive tumours (without or with clinical evidence of metastasis 3 years after surgery), we identified 164 differentially expressed genes potentially involved in the acquisition of metastatic potential. This study contributes to the understanding of HNSCC, staging patients into prognostic groups and identifying high-risk patients who may benefit from more aggressive treatment.
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chromosomal location
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Human Genetics
Oncology
Apoptosis
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