DAVISLABORATORY . GITHUB . IO {
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Title:
Scoring and Marker Selection Method Based on Modified TF-IDF • smartid
Description:
This package enables automated selection of group specific signature, especially for rare population. The package is developed for generating specifc lists of signature genes based on Term Frequency-Inverse Document Frequency (TF-IDF) modified methods. It can also be used as a new gene-set scoring method or data transformation method. Multiple visualization functions are implemented in this package.
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Keywords {🔍}
smartid, package, identification, based, license, marker, modified, tfidf, group, specific, signature, developed, genes, groups, rare, populations, high, install, bioconductor, jinjin, chen, reference, articles, changelog, scoring, method, automatically, identify, score, cells, gene, sets, scrna, data, designed, automated, signatures, interest, generating, multiple, approach, good, finding, markers, pay, attention, expression, variance, biological, medical,
Topics {✒️}
jinjin chen modified tf-idf approach modified tf-idf score cells based rare group populations including cancer research multiple groups based marker identification bioconductor directly davislaboratory/smartid rare populations automated identification gene sets scrna data finding markers high expression high variance medical applications developmental biology standard demonstration development version github devtools quietly = true site built package designed smartid 1 smartid developed genes groups package scoring signatures interest good pay attention biological check installation install install_github installed requirenamespace biocmanager packages pkgdown 2
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