BIOCONDUCTOR . ORG {
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Title:
Bioconductor - zinbwave
Description:
Implements a general and flexible zero-inflated negative binomial model that can be used to provide a low-dimensional representations of single-cell RNA-seq data. The model accounts for zero inflation (dropouts), over-dispersion, and the count nature of the data. The model also accounts for the difference in library sizes and optionally for batch effects and/or other covariates, avoiding the need for pre-normalize the data.
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Keywords {🔍}
bioconductor, package, packages, version, zinbwave, data, aut, model, rnaseq, release, source, singlecell, risso, enter, install, reports, binary, learn, developers, started, software, zeroinflated, negative, binomial, general, flexible, accounts, nature, davide, gribkova, perraudeau, vert, installation, start, documentation, system, details, bioc, stats, url, macos, zinbwavetgz, repository, git, clone, code, registration, open, gbcc, joint,
Topics {✒️}
org/packages/zinbwave source repository single-cell rna-seq data joint galaxy/bioconductor conference bioconductor release tgz source repository source package jean-philippe vert [aut] bug reports release //code bioconductor support site /drisso/zinbwave/issues low-dimensional representations script reference manual gz windows binary zip macos binary tgz macos binary package installed svetlana gribkova [aut] fanny perraudeau [aut] davide risso [aut git clone https details biocviews matrix system requirements package packages started install zinbwave vignette bioconductor //bioconductor model accounts registration open count nature library sizes batch effects pre-normalize signal extraction � nature communications quietly = true older versions pdf news singlecellexperiment imports developer access released version devel version transcriptomics version org/10 org flexible method view documentation
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