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Title:
Bioconductor - fishpond
Description:
Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains a number of utilities for working with Salmon and Alevin quantification files.
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Keywords {๐}
bioconductor, package, ctb, packages, fishpond, version, aut, expression, release, analysis, source, methods, inferential, love, enter, install, reports, binary, learn, developers, started, software, data, rnaseq, uncertainty, quantification, sampling, salmon, zhu, michael, srivastava, patro, ibrahim, installation, start, documentation, system, swish, html, script, details, bioc, stats, url, macos, fishpondtgz, repository, git, clone, code,
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org/packages/fishpond source repository /mikelove/fishpond bug reports joint galaxy/bioconductor conference gov/pmc/articles/pmc6765120 bioconductor release tgz source repository source package release //code org/tag/fishpond gene expression analysis ๏ฟฝnonparametric expression analysis de analysis accounting bioconductor support site rna-seq data gz windows binary zip macos binary tgz macos binary michael love [aut alevin quantification files joseph ibrahim [aut hirak sarkar [ctb] euphy wu [ctb] steve lianoglou [ctb] wes wilson [ctb] inferential replicate counts package installed git clone https anqi zhu [aut avi srivastava [aut rob patro [aut script reference manual details biocviews jsonlite system requirements io/fishpond https packages started install package love mi bioconductor //bioconductor abundance quantification ibrahim jg inferential replicates registration open differential transcript gibbs sampling bootstrap sampling 1093/nar/gkz622 quietly = true
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