BIOCONDUCTOR . ORG {
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Title:
Bioconductor - airpart
Description:
Airpart identifies sets of genes displaying differential cell-type-specific allelic imbalance across cell types or states, utilizing single-cell allelic counts. It makes use of a generalized fused lasso with binomial observations of allelic counts to partition cell types by their allelic imbalance. Alternatively, a nonparametric method for partitioning cell types is offered. The package includes a number of visualizations and quality control functions for examining single cell allelic imbalance datasets.
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Keywords {🔍}
bioconductor, package, allelic, airpart, packages, version, imbalance, release, cell, source, differential, types, singlecell, wancen, enter, install, reports, binary, learn, developers, started, software, celltypespecific, counts, control, datasets, aut, orcid, love, installation, start, documentation, system, details, bioc, stats, url, macos, airparttgz, repository, git, clone, code, registration, open, gbcc, joint, galaxybioconductor, conference, search,
Topics {✒️}
org/packages/airpart source repository /wancen/airpart bug reports quality control functions joint galaxy/bioconductor conference differential allelic imbalance bioconductor release tgz source repository single-cell datasets source package analyzing allelic imbalance partition cell types partitioning cell types release //code bioconductor support site allelic imbalance /wancen/airpart/issues generalized fused lasso interpretable statistical models script reference manual gz windows binary zip macos binary tgz macos binary airpart identifies sets wancen mu [aut michael love [aut package includes package installed git clone https allelic counts details biocviews pbapply system requirements cell types packages package started install bioconductor //bioconductor love mi org registration open binomial observations nonparametric method cre] orcid ctb] orcid doi quietly = true older versions pdf news gpl-2 depends
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