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Keywords {🔍}

targz, txt, standard, capped, tsv, pluspf, pluspfp, viral, refeq, archaea, human, univeccore, fungi, plasmid, protozoa, bacteria, index, database, kraken, minusb, plant, bracken, refseq, collection, size, indexes, files, file, large, issue, fixed, version, https, krakenuniq, june, databases, mers, url, inclusive, genbank, tpa, pdb, information, september, corent, library, archive, built, gtdb, release,

Topics {✒️}

max-db-size option public repositories older “minikraken” indexes latest gtdb release kraken-inspect command memory efficient tool metagenomics sequencing reads eukaryotic pathogen genomes bracken databases built preload-size 8g preload-size 500m regular quarterly updates gtdb team updates k-mer length collection approximately annually mask argument index md5 gtdb v226 md5 gtdb v220 running kraken2-inspect nt index releases bigger nt database library fasta file �database chunking” parameter gz minikraken v2 md5 core_nt database tsv file giving txt file giving kraken 2 database https url standard tsv file lists bracken databases kraken 2 manual kraken protocol �minikraken” indexes md5 human libraries bracken websites https url gz kraken indexes freely core_nt updates full set md5 file removing https index smaller �core_nt” database core_nt database truncated files significantly smaller truncated versions related tool

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