
NCBI . NLM . NIH . GOV {
}
Title[redir]:
CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data - PMC
Description:
Most existing dimensionality reduction and clustering packages for single-cell RNA-seq (scRNA-seq) data deal with dropouts by heavy modeling and computational machinery. Here, we introduce CIDR (Clustering through Imputation and Dimensionality ...
Matching Content Categories {📚}
- Education
- Science
- Technology & Computing
Content Management System {📝}
What CMS is ncbi.nlm.nih.gov built with?
Custom-built
No common CMS systems were detected on Ncbi.nlm.nih.gov, and no known web development framework was identified.
Traffic Estimate {📈}
What is the average monthly size of ncbi.nlm.nih.gov audience?
🌠 Phenomenal Traffic: 5M - 10M visitors per month
Based on our best estimate, this website will receive around 6,694,437 visitors per month in the current month.
check SE Ranking
check Ahrefs
check Similarweb
check Ubersuggest
check Semrush
How Does Ncbi.nlm.nih.gov Make Money? {💸}
We don’t know how the website earns money.
Not all websites are made for profit; some exist to inform or educate users. Or any other reason why people make websites. And this might be the case. Ncbi.nlm.nih.gov could have a money-making trick up its sleeve, but it's undetectable for now.
Keywords {🔍}
cidr, data, clustering, set, doi, cells, cell, dropout, scrnaseq, expression, dropouts, algorithm, clusters, types, function, google, scholar, analysis, algorithms, pmc, principal, tsne, additional, number, pubmed, singlecell, file, figure, human, brain, fig, distances, article, gene, index, zifa, coordinates, adjusted, rand, neurons, imputation, dissimilarity, expected, free, samples, cluster, output, sets, single, rate,
Topics {✒️}
scrna-seq single-cell rna-seq single-cell rna-seq data single-cell rna-seq scrna-seq data sets scrna-seq data set scrna-seq data analysis bulk rna-seq samples recent scrna-seq studies single-cell transcriptome data cell-type molecular signatures pmc beta search calinski–harabasz index versus [doi] [google scholar] supplementary figures s1–s9 dropout-affected data set /vccri/cidr/releases/tag/0 scrna-seq data rna-seq experiment modified bi-clustering algorithm studying cell-type heterogeneity iterative expectation-maximization algorithm scrna-seq technology single-cell transcriptomes van der maaten 𝑜 kj zifa pancreatic islet brain data set art dimensionality-reduction package biological data sets data sets transformed log-transformed expression values pc principal coordinates amazon web services simulated data set 𝑜 ki [google scholar] 9 [google scholar] 19 cell-cycle stage single-cell genomics art dimensionality-reduction algorithms understanding brain development dropout data set argument remains valid publisher site pdf principal coordinate analysis adjusted rand index calinski–harabasz index [18] simulation data set license information pmcid simplified logistic function
Questions {❓}
- Ward’s hierarchical agglomerative clustering method: which algorithms implement Ward’s criterion?
Social Networks {👍}(6)
External Links {🔗}(66)
- What's the monthly income of https://doi.org/10.1186/s13059-017-1188-0?
- How much revenue does http://creativecommons.org/licenses/by/4.0/ produce monthly?
- What's the monthly income of http://creativecommons.org/publicdomain/zero/1.0/?
- How much does https://github.com/VCCRI/CIDR bring in each month?
- How much does https://github.com/VCCRI/CIDR/releases/tag/0.1.5 net monthly?
- See how much https://github.com/VCCRI/CIDR-examples makes per month
- How much does https://github.com/VCCRI/CIDR-comparisons pull in monthly?
- What's the profit of https://doi.org/10.1186/s13059-015-0805-z?
- See how much https://scholar.google.com/scholar_lookup?journal=Genome%20Biol&title=ZIFA:%20Dimensionality%20reduction%20for%20zero-inflated%20single-cell%20gene%20expression%20analysis&author=E%20Pierson&author=C%20Yau&volume=16&issue=1&publication_year=2015&pages=1-10&pmid=26527291&doi=10.1186/s13059-015-0805-z& makes per month
- How much cash flow does https://doi.org/10.1038/nmeth.2967 have monthly?
- How much revenue does https://scholar.google.com/scholar_lookup?journal=Nat%20Methods&title=Bayesian%20approach%20to%20single-cell%20differential%20expression%20analysis&author=PV%20Kharchenko&author=L%20Silberstein&author=DT%20Scadden&volume=11&issue=7&publication_year=2014&pages=740-2&pmid=24836921&doi=10.1038/nmeth.2967& generate?
- What's the profit of https://doi.org/10.1016/j.ymeth.2015.06.021?
- How much does https://scholar.google.com/scholar_lookup?journal=Methods&title=Computational%20assignment%20of%20cell-cycle%20stage%20from%20single-cell%20transcriptome%20data&author=A%20Scialdone&author=KN%20Natarajan&author=LR%20Saraiva&author=V%20Proserpio&author=SA%20Teichmann&volume=85&publication_year=2015&pages=54-61&pmid=26142758&doi=10.1016/j.ymeth.2015.06.021& earn?
- How much does https://doi.org/10.1038/nbt.3102 rake in every month?
- What's the total monthly financial gain of https://scholar.google.com/scholar_lookup?journal=Nat%20Biotechnol&title=Computational%20analysis%20of%20cell-to-cell%20heterogeneity%20in%20single-cell%20RNA-sequencing%20data%20reveals%20hidden%20subpopulations%20of%20cells&author=F%20Buettner&author=KN%20Natarajan&author=FP%20Casale&author=V%20Proserpio&author=A%20Scialdone&volume=33&issue=2&publication_year=2015&pages=155-60&pmid=25599176&doi=10.1038/nbt.3102&?
- How profitable is https://doi.org/10.1186/s13059-015-0866-z?
- How much does https://scholar.google.com/scholar_lookup?journal=Genome%20Biol&title=Pooling%20across%20cells%20to%20normalize%20single-cell%20RNA%20sequencing%20data%20with%20many%20zero%20counts&author=AT%20Lun&author=K%20Bach&author=JC%20Marioni&volume=17&issue=1&publication_year=2016&pages=1&pmid=27122128&doi=10.1186/s13059-015-0866-z& gross monthly?
- What are the earnings of https://doi.org/10.1186/s13059-015-0844-5?
- How much revenue does https://scholar.google.com/scholar_lookup?journal=Genome%20Biol&title=MAST:%20A%20flexible%20statistical%20framework%20for%20assessing%20transcriptional%20changes%20and%20characterizing%20heterogeneity%20in%20single-cell%20RNA%20sequencing%20data&author=G%20Finak&author=A%20McDavid&author=M%20Yajima&author=J%20Deng&author=V%20Gersuk&volume=16&issue=1&publication_year=2015&pages=1-13&pmid=26653891&doi=10.1186/s13059-015-0844-5& generate?
- Earnings of https://doi.org/10.1038/nbt.2859
- Financial intake of https://scholar.google.com/scholar_lookup?journal=Nat%20Biotechnol&title=The%20dynamics%20and%20regulators%20of%20cell%20fate%20decisions%20are%20revealed%20by%20pseudotemporal%20ordering%20of%20single%20cells&author=C%20Trapnell&author=D%20Cacchiarelli&author=J%20Grimsby&author=P%20Pokharel&author=S%20Li&volume=32&issue=4&publication_year=2014&pages=381-6&pmid=24658644&doi=10.1038/nbt.2859&
- What is the earnings of https://scholar.google.com/scholar_lookup?journal=J%20Mach%20Learn%20Res&title=Visualizing%20data%20using%20t-SNE&author=L%20van%20der%20Maaten&author=G%20Hinton&volume=9&issue=Nov&publication_year=2008&pages=2579-605&?
- Monthly income for https://doi.org/10.1126/science.aaa1934
- How much revenue does https://scholar.google.com/scholar_lookup?journal=Science&title=Cell%20types%20in%20the%20mouse%20cortex%20and%20hippocampus%20revealed%20by%20single-cell%20RNA-Seq&author=A%20Zeisel&author=AB%20Mu%C3%B1oz-Manchado&author=S%20Codeluppi&author=P%20L%C3%B6nnerberg&author=G%20La%20Manno&volume=347&issue=6226&publication_year=2015&pages=1138-42&pmid=25700174&doi=10.1126/science.aaa1934& produce monthly?
- What's the financial outcome of https://doi.org/10.1186/s12859-016-0984-y?
- What's the financial gain of https://scholar.google.com/scholar_lookup?journal=BMC%20Bioinform&title=pcaReduce:%20Hierarchical%20clustering%20of%20single%20cell%20transcriptional%20profiles&author=J%20Zurauskiene&author=C%20Yau&volume=17&issue=1&publication_year=2016&pages=140&pmid=27005807&doi=10.1186/s12859-016-0984-y&?
- What are the total earnings of https://doi.org/10.1038/nmeth.4236?
- How much does https://doi.org/10.1093/bioinformatics/btv088 net monthly?
- Find out how much https://scholar.google.com/scholar_lookup?journal=Bioinformatics&title=Identification%20of%20cell%20types%20from%20single-cell%20transcriptomes%20using%20a%20novel%20clustering%20method&author=C%20Xu&author=Z%20Su&volume=31&publication_year=2015&pages=1974-80&pmid=25805722&doi=10.1093/bioinformatics/btv088& earns monthly
- How much revenue does https://doi.org/10.1038/nature14966 bring in?
- See how much https://scholar.google.com/scholar_lookup?journal=Nature&title=Single-cell%20messenger%20RNA%20sequencing%20reveals%20rare%20intestinal%20cell%20types&author=D%20Gr%C3%BCn&author=A%20Lyubimova&author=L%20Kester&author=K%20Wiebrands&author=O%20Basak&volume=525&issue=7568&publication_year=2015&pages=251-5&pmid=26287467&doi=10.1038/nature14966& makes per month
- How much income is https://doi.org/10.1371/journal.pcbi.1003696 earning monthly?
- What's the financial gain of https://scholar.google.com/scholar_lookup?journal=PLoS%20Comput%20Biol&title=Modeling%20bi-modality%20improves%20characterization%20of%20cell%20cycle%20on%20gene%20expression%20in%20single%20cells&author=A%20McDavid&author=L%20Dennis&author=P%20Danaher&author=G%20Finak&author=M%20Krouse&volume=10&issue=7&publication_year=2014&pages=1003696&pmid=25032992&doi=10.1371/journal.pcbi.1003696&?
- https://doi.org/10.1186/s13059-016-0927-y's financial summary
- How much money does https://scholar.google.com/scholar_lookup?journal=Genome%20Biol&title=Design%20and%20computational%20analysis%20of%20single-cell%20RNA%20sequencing%20experiments&author=R%20Bacher&author=C%20Kendziorski&volume=17&issue=1&publication_year=2016&pages=1&pmid=27052890&doi=10.1186/s13059-016-0927-y& generate?
- What are the total earnings of https://doi.org/10.1126/scisignal.aad1932?
- How much does https://scholar.google.com/scholar_lookup?journal=Sci%20Signal&title=Avoiding%20common%20pitfalls%20when%20clustering%20biological%20data&author=T%20Ronan&author=Z%20Qi&author=KM%20Naegle&volume=9&issue=432&publication_year=2016&pages=6&pmid=27303057&doi=10.1126/scisignal.aad1932& pull in?
- What's the financial intake of https://scholar.google.com/scholar_lookup?journal=Commun%20Stat&title=A%20dendrite%20method%20for%20cluster%20analysis&author=T%20Cali%C5%84ski&author=J%20Harabasz&volume=3&issue=1&publication_year=1974&pages=1-27&?
- Find out how much https://doi.org/10.1007/BF01908075 earns monthly
- How much does https://scholar.google.com/scholar_lookup?journal=J%20Classif&title=Comparing%20partitions&author=L%20Hubert&author=P%20Arabie&volume=2&issue=1&publication_year=1985&pages=193-218&doi=10.1007/BF01908075& rake in every month?
- Income figures for https://doi.org/10.1073/pnas.1507125112
- How much revenue does https://scholar.google.com/scholar_lookup?journal=Proc%20Natl%20Acad%20Sci&title=A%20survey%20of%20human%20brain%20transcriptome%20diversity%20at%20the%20single%20cell%20level&author=S%20Darmanis&author=SA%20Sloan&author=Y%20Zhang&author=M%20Enge&author=C%20Caneda&volume=112&issue=23&publication_year=2015&pages=7285-90&pmid=26060301&doi=10.1073/pnas.1507125112& produce monthly?
- What are the total earnings of https://doi.org/10.1523/JNEUROSCI.4178-07.2008?
- How much cash flow does https://scholar.google.com/scholar_lookup?journal=J%20Neurosci&title=A%20transcriptome%20database%20for%20astrocytes,%20neurons,%20and%20oligodendrocytes:%20a%20new%20resource%20for%20understanding%20brain%20development%20and%20function&author=JD%20Cahoy&author=B%20Emery&author=A%20Kaushal&author=LC%20Foo&author=JL%20Zamanian&volume=28&issue=1&publication_year=2008&pages=264-78&pmid=18171944&doi=10.1523/JNEUROSCI.4178-07.2008& have monthly?
- Financial intake of https://doi.org/10.15252/embr.201540946
- How much does https://scholar.google.com/scholar_lookup?journal=EMBO%20Rep&title=Single-cell%20transcriptomes%20reveal%20characteristic%20features%20of%20human%20pancreatic%20islet%20cell%20types&author=J%20Li&author=J%20Klughammer&author=M%20Farlik&author=T%20Penz&author=A%20Spittler&volume=17&issue=2&publication_year=2016&pages=178-87&pmid=26691212&doi=10.15252/embr.201540946& net monthly?
- How much does https://doi.org/10.1101/gr.190595.115 gross monthly?
- How much does https://scholar.google.com/scholar_lookup?journal=Genome%20Res&title=Defining%20cell%20types%20and%20states%20with%20single-cell%20genomics&author=C%20Trapnell&volume=25&issue=10&publication_year=2015&pages=1491-8&pmid=26430159&doi=10.1101/gr.190595.115& rake in every month?
- How much money does https://doi.org/10.1007/BF02294026 make?
- Income figures for https://scholar.google.com/scholar_lookup?journal=Psychometrika&title=The%20analytical%20solution%20of%20the%20additive%20constant%20problem&author=F%20Cailliez&volume=48&issue=2&publication_year=1983&pages=305-8&doi=10.1007/BF02294026&
- Check the income stats for https://doi.org/10.1207/s15327906mbr0102_10
- Income figures for https://scholar.google.com/scholar_lookup?journal=Multivar%20Behav%20Res&title=The%20scree%20test%20for%20the%20number%20of%20factors&author=RB%20Cattell&volume=1&issue=2&publication_year=1966&pages=245-76&pmid=26828106&doi=10.1207/s15327906mbr0102_10&
- What is the earnings of https://doi.org/10.1007/s00357-014-9161-z?
- Income figures for https://scholar.google.com/scholar_lookup?journal=J%20Classif&title=Ward%E2%80%99s%20hierarchical%20agglomerative%20clustering%20method:%20which%20algorithms%20implement%20Ward%E2%80%99s%20criterion?&author=F%20Murtagh&author=P%20Legendre&volume=31&issue=3&publication_year=2014&pages=274-95&doi=10.1007/s00357-014-9161-z&
- What is the monthly revenue of https://github.com/ncbi?
- How much money does https://www.google.com/maps/place/8600+Rockville+Pike,+Bethesda,+MD+20894/%4038.9959508, -77.101021,17z/data%3D!3m1!4b1!4m5!3m4!1s0x89b7c95e25765ddb%3A0x19156f88b27635b8!8m2!3d38.9959508! 4d-77.0988323 generate?
- Get to know what's the income of https://www.nlm.nih.gov/web_policies.html
- What's the financial outcome of https://www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/freedom-information-act-office?
- How much revenue does https://www.hhs.gov/vulnerability-disclosure-policy/index.html bring in?
- Explore the financials of https://support.nlm.nih.gov/?pagename=cloudpmc-viewer%3Apmc%3Aarticle%3Ajournal
- Learn about the earnings of https://www.nlm.nih.gov/accessibility.html
- How much does https://www.nlm.nih.gov/careers/careers.html net monthly?
- How much money does https://www.nlm.nih.gov/ make?
- How much profit is https://www.nih.gov/ making per month?
- Get to know what's the income of https://www.hhs.gov/
- How profitable is https://www.usa.gov/?
Analytics and Tracking {📊}
- Google Analytics
- Google Analytics 4
- Google Tag Manager
Libraries {📚}
- jQuery
- jQuery module (jquery-3.6.0)
- Lazy.js
- Zoom.js
Emails and Hosting {✉️}
Mail Servers:
- nihcesxway.hub.nih.gov
- nihcesxway2.hub.nih.gov
- nihcesxway3.hub.nih.gov
- nihcesxway4.hub.nih.gov
- nihcesxway5.hub.nih.gov
Name Servers:
- dns1-ncbi.ncbi.nlm.nih.gov
- dns2-ncbi.ncbi.nlm.nih.gov
- lhcns1.nlm.nih.gov
- lhcns2.nlm.nih.gov
CDN Services {📦}
- Ncbi