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Title[redir]:
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies - PMC
Description:
Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace. RAxML ...
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Keywords {🔍}
raxml, doi, data, google, likelihood, scholar, phylogenetic, stamatakis, maximum, pubmed, search, support, offers, pmc, bootstrap, nlm, trees, supplementary, option, biol, user, large, datasets, models, avx, tree, ncbi, version, bioinformatics, article, memory, code, algorithm, implements, pattengale, aberer, taxa, phylogeny, berger, postanalysis, phylogenies, analyses, extended, features, intrinsics, options, socalled, computing, protein, parallelization,
Topics {✒️}
supports coarse-grain/fine-grain parallelism org/web/software/raxml/hands_on fused multiply-add instructions likelihood-based phylogenetic inference pmc beta search estimate maximum-likelihood phylogenies hybrid mpi/pthreads parallelization hybrid mpi/pthreads version computing robinson–foulds distances [google scholar] stamatakis [google scholar] salichos fine-grain parallelization coarse-grain parallelization full-length sequences parallelized phylogenetic post-analysis supplementary materials included raxml software page pthreads-based version maximum likelihood estimate raxml google group simple tree search raxml web servers generation sequencing revolution morphological data matrices generation sequencing data maximum likelihood flavors stable phylogenetic signal standard bootstrap search license information pmcid growing dataset sizes extremely large analyses united states government good likelihood scores multi-state morphological parallel distributed processing publisher site pdf mpi-parallelized algorithm strong phylogenetic signals general time reversible message passing interface accurate reference phylogenies potentially run times modeling protein evolution obtain bootstrap support references aberer aj conducting post-analyses independent tree searches superficial tree searches rapid bootstrap algorithm automated plausibility analysis
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