
NCBI . NLM . NIH . GOV {
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Title[redir]:
FIMO: scanning for occurrences of a given motif - PMC
Description:
Summary: A motif is a short DNA or protein sequence that contributes to the biological function of the sequence in which it resides. Over the past several decades, many computational methods have been described for identifying, characterizing and ...
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Keywords {🔍}
motif, fimo, sequence, motifs, doi, occurrences, search, dna, protein, scanning, genome, supplementary, pmc, nlm, sequences, google, scholar, bioinformatics, bailey, data, sites, ctcf, ncbi, score, discovery, output, html, binding, human, pubmed, list, database, pvalue, meme, site, information, article, searching, analysis, individual, software, false, qvalue, single, suite, web, candidate, storey, chipseq, user,
Topics {✒️}
detect cis-regulatory modules precision–recall curve suggests motif-based sequence analysis position-specific frequency matrix position-specific frequency matrices overlap chip-seq peaks log-likelihood ratio score position-specific scoring matrices precision–recall curve comparing precision-recall curve created pmc beta search top-scoring predicted occurrences [google scholar] storey user-supplied sequence file protein binding site xml/html output motifscanner false discovery rates plain text file simple text format supplementary materials included candidate regulatory regions [google scholar] license information pmcid xml-based format ucsc genome browser statistically rigorous fashion core functions required chip-seq experiment individual motif occurrences �log-odds score supplementary material references united states government basic functional units order custom backgrounds hidden markov model order null model letter background frequencies gold standard derived wall clock time nucleic acids res publisher site pdf top-scoring occurrences entire eukaryotic genome search dna sequences nucleic acid sequences protein sequence motif supports custom backgrounds source code freely minimal fdr threshold tab-delimited files
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