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Keywords {🔍}

motifs, doi, binding, sequences, cisfinder, motif, word, google, scholar, sequence, pubmed, test, data, control, pmc, dna, article, set, pfm, free, pfms, tfs, sites, algorithm, fig, overrepresented, position, pouf, match, chip, nucleotide, clustering, segments, words, method, search, counts, sets, transcription, based, genome, supplementary, loci, res, frequency, chipseq, instances, elements, identified, correlation,

Topics {✒️}

oct–3n–sox composite motif rb1-inducible coiled-coil 1 cis-regulatory modules predicted estrogen-related receptor beta estrogen receptor-related receptors high-throughput biochemical analysis heterogeneous genome-wide datasets dr huck-hui ng canonical pou-motif atgcaaat predict protein–dna interactions inactivate pluripotency-related genes published chip-seq data published chip-pet study oct–3n–sox motif oct–sox composite motif oct–sox motif density pmc beta search vivo protein–dna interactions major pluripotency-related tfs transcription factor-binding profiles oct–3n–sox motifs 1093/dnares/dsp014 exhaustive search top-scored binding sites genome-wide expression patterns top-scored consensus sequence supplementary text s1 chromatin-immunoprecipitation microarray experiments detecting cis-regulatory elements chip-pet data sets [google scholar] 22 [google scholar] 24 [google scholar] 30 chip-seq data sets longer dna-binding motifs existing motif-finding tools specific n-mer word estrogen-related receptors oct–3n–sox full matrix exceeds n-mer word counts pseudo-random sequences generated [supplementary data] dsp014_index cis-regulatory modules transcription start sites true binding site dynamic transcription programs full binding motif alternative binding motifs examine alternative motifs genome-wide mapping

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