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Title[redir]:
Prequips—an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data - PMC
Description:
Summary: We describe an integrative software platform, Prequips, for comparative proteomics-based systems biology analysis that: (i) integrates all information generated from mass spectrometry (MS)-based proteomics as well as from basic proteomics ...
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Keywords {🔍}
data, prequips, analysis, information, doi, software, meta, tools, core, peptide, viewers, search, pmc, analyses, fig, nlm, integration, proteomics, proteins, model, systems, biology, multiple, samples, spectrum, ncbi, visualization, integrated, sample, feature, network, cytoscape, gaggle, grant, pubmed, google, scholar, protein, abundances, datasets, peptides, complex, single, figure, bioinformatics, platform, article, proteomic, iii, keller,
Topics {✒️}
lc-ms/ms approaches model-view-controller architecture lc-ms/ms analysis open-source software system protein–protein interactions obtained pmc beta search ms-based proteomic data software tools—msn spectra open-source software implemented publisher site pdf figure 1d shows ms/ms2 spectrum viewers open-source system web-based tools extensible software platform integrative software platform passes protein ids optimize experimental conditions software platform-independent ms data analysis graphical user interface trans-proteomic pipeline systems biology studies systems biology investigations complex ms data protein-level information peptide feature map diverse data types multiple ms data functional enrichment analysis hierarchical structure—spectra systems biology tools united states government license information pmcid sophisticated filtering framework evaluate data obtained peptide feature maps �multi-sample analysis multi-sample analysis specific software environment data model based peptide identifications made data formats microarray data management inclusion list builder generic data model related meta data systems biology analyses java-based workbench virtually arbitrary number
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